8SFU

Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin

• PDB DOI: https://doi.org/10.2210/pdb8SFU/pdb

• Classification: TRANSFERASE
• Organism(s): Tetranychus urticae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-04-11 Released: 2023-09-13 
• Deposition Author(s): Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.
• Funding Organization(s): National Institute of Food and Agriculture (NIFA, United States)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.214 
• R-Value Work: 0.180 

Starting Model: experimental

Literature

Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with naringin

Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 99.87 kDa 
• Atom Count: 7,290 
• Modelled Residue Count: 839 
• Deposited Residue Count: 874 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-glycosyltransferase 202A2	A, B	437	Tetranychus urticae	Mutation(s): 0  Gene Names: 107367435, UGT202A2
UniProt
Find proteins for T1KUK4 (Tetranychus urticae) Explore T1KUK4  Go to UniProtKB:  T1KUK4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZWN (Subject of Investigation/LOI)	D [auth A], F [auth B]	(2S)-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-1-benzopyran-7-yl 2-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside C27 H32 O14 DFPMSGMNTNDNHN-ZPHOTFPESA-N
UDP (Subject of Investigation/LOI)	C [auth A], E [auth B]	URIDINE-5'-DIPHOSPHATE C9 H14 N2 O12 P2 XCCTYIAWTASOJW-XVFCMESISA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.214 
• R-Value Work: 0.180 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.482	α = 90
b = 115.677	β = 90
c = 165.693	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing
SERGUI	data collection

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-09-13 
Deposition Author(s): Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.

---

Funding Organization	Location	Grant Number
National Institute of Food and Agriculture (NIFA, United States)	United States	#2020-67014- 31179

Revision History  

• Version 1.0: 2023-09-13
  Type: Initial release