8SDJ | pdb_00008sdj

Hydrophobic Interactions Drive the Tetrameric Assembly of the TRIM20 Coiled-Coil Domain

PDB DOI: https://doi.org/10.2210/pdb8SDJ/pdb

Classification: LIGASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-04-06 Released: 2024-04-24
Deposition Author(s): Lou, X.H., Ma, B.B., Zhuang, Y., Li, X.C.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.294 (Depositor), 0.294 (DCC)
R-Value Work:
0.259 (Depositor), 0.259 (DCC)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Hydrophobic Interactions Drive the Tetrameric Assembly of the TRIM20 Coiled-Coil Domain

Lou, X.H., Ma, B.B., Zhuang, Y., Li, X.C.

To be published.

Macromolecule Content

Total Structure Weight: 51.7 kDa
Atom Count: 3,722
Modeled Residue Count: 448
Deposited Residue Count: 448
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyrin	A, B, C, D	112	Homo sapiens	Mutation(s): 0 Gene Names: MEFV, MEF, TRIM20
UniProt & NIH Common Fund Data Resources
Find proteins for O15553 (Homo sapiens) Explore O15553 Go to UniProtKB: O15553
PHAROS: O15553 GTEx: ENSG00000103313
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O15553
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.294 (Depositor), 0.294 (DCC)
R-Value Work: 0.259 (Depositor), 0.259 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.6	α = 90
b = 38.83	β = 89.94
c = 164.3	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-04-24

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01 AI080779
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01 AI155488

Revision History (Full details and data files)

Version 1.0: 2024-04-24
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.