8SDE | pdb_00008sde

Electrostatic-Mediated Tetramerization of the Coiled-Coil Domain in TRIM29

• PDB DOI: https://doi.org/10.2210/pdb8SDE/pdb

• Classification: LIGASE
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-04-06 Released: 2024-04-24 
• Deposition Author(s): Lou, X.H., Zhuang, Y., Ma, B.B., Li, X.C.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.27 Å
• R-Value Free: 
  0.275 (Depositor), 0.275 (DCC) 
• R-Value Work: 
  0.227 (Depositor), 0.227 (DCC) 

Starting Model: other

Literature

Electrostatic-Mediated Tetramerization of the Coiled-Coil Domain in TRIM29

Lou, X.H., Zhuang, Y., Ma, B.B., Li, X.C.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: light scattering

Macromolecule Content 

• Total Structure Weight: 11.07 kDa 
• Atom Count: 771 
• Modeled Residue Count: 89 
• Deposited Residue Count: 92 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tripartite motif-containing protein 29	A	92	Mus musculus	Mutation(s): 0  Gene Names: Trim29
UniProt & NIH Common Fund Data Resources
Find proteins for Q8R2Q0 (Mus musculus) Explore Q8R2Q0  Go to UniProtKB:  Q8R2Q0
IMPC:  MGI:1919419

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth A], C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.27 Å
• R-Value Free:  0.275 (Depositor), 0.275 (DCC) 
• R-Value Work:  0.227 (Depositor), 0.227 (DCC) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.05	α = 90
b = 47.63	β = 90
c = 107.51	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHENIX	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-04-24 
Deposition Author(s): Lou, X.H., Zhuang, Y., Ma, B.B., Li, X.C.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01 AI080779
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01 AI155488

Revision History  

• Version 1.0: 2024-04-24
  Type: Initial release