8RM9 | pdb_00008rm9

Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant S28P, polymorph 2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.06 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 8RM9

This is version 1.1 of the entry. See complete history

Literature

Cryo-EM exposes diverse polymorphism in IAPP mutants to guide the rational design of peptide-based therapeutics.

Ooi, S.A.Valli, D.Kuska, M.I.Mari, H.Chaudhary, H.Wahlgren, W.Y.Westenhoff, S.Tietze, A.A.Novials, A.Servitja, J.M.Maj, M.

(2025) J Mol Biology 437: 169405-169405

  • DOI: https://doi.org/10.1016/j.jmb.2025.169405
  • Primary Citation Related Structures: 
    8QJ1, 8QVP, 8QVQ, 8RM8, 8RM9

  • PubMed Abstract: 

    In the pursuit of potential therapeutic agents for type 2 diabetes, non-amyloidogenic forms of the human Islet Amyloid Polypeptide (hIAPP) containing site-specific mutations are of significant interest. In the present study, we dissect the three proline mutations present in the core region of the non-amyloidogenic rat IAPP into single-point mutations at A25P, S28P, and S29P sites. We apply high-resolution cryo-electron microscopy and solve the structures of 6 polymorphs formed by these mutants, revealing the peptide's self-assembly patterns and identifying critical interactions that reinforce these structures in the presence of the β-sheet breaker. A unique trimeric aggregate with C3 symmetry was identified in the A25P mutant, which we resolved with a 3.05 Å resolution, while asymmetric trimeric assemblies were observed in the other mutants. Guided by the high-resolution structural models of A25P and S28P fibrils obtained in our study, we successfully designed novel non-amyloidogenic mutants of IAPP with potential therapeutic value. Our findings demonstrate the immense potential of structure-based approaches in developing effective therapeutics against amyloid diseases.


  • Organizational Affiliation
    • Department of Chemistry and Molecular Biology, Medicinaregatan 7B, Gothenburg 413 90, Sweden.

Macromolecule Content 

  • Total Structure Weight: 58.76 kDa 
  • Atom Count: 3,160 
  • Modeled Residue Count: 440 
  • Deposited Residue Count: 570 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Islet amyloid polypeptide38Homo sapiensMutation(s): 2 
UniProt & NIH Common Fund Data Resources
Find proteins for P10997 (Homo sapiens)
Explore P10997 
Go to UniProtKB:  P10997
PHAROS:  P10997
GTEx:  ENSG00000121351 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10997
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.06 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21
RECONSTRUCTIONRELION4.0.0

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSwedenVR 2020-05403
Other privateSwedish Society for Medical Research (S20-0156)

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release
  • Version 1.1: 2026-02-11
    Changes: Data collection, Database references