8RBF | pdb_00008rbf

CryoEM structure of the post-powerstroke actomyosin-5a complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8RBF

This is version 1.2 of the entry. See complete history

Literature

Swinging lever mechanism of myosin directly shown by time-resolved cryo-EM.

Klebl, D.P.McMillan, S.N.Risi, C.Forgacs, E.Virok, B.Atherton, J.L.Harris, S.A.Stofella, M.Winkelmann, D.A.Sobott, F.Galkin, V.E.Knight, P.J.Muench, S.P.Scarff, C.A.White, H.D.

(2025) Nature 642: 519-526

  • DOI: https://doi.org/10.1038/s41586-025-08876-5
  • Primary Citation Related Structures: 
    8R9V, 8RBF, 8RBG

  • PubMed Abstract: 

    Myosins produce force and movement in cells through interactions with F-actin 1 . Generation of movement is thought to arise through actin-catalysed conversion of myosin from an ATP-generated primed (pre-powerstroke) state to a post-powerstroke state, accompanied by myosin lever swing 2,3 . However, the initial, primed actomyosin state has never been observed, and the mechanism by which actin catalyses myosin ATPase activity is unclear. Here, to address these issues, we performed time-resolved cryogenic electron microscopy (cryo-EM) 4 of a myosin-5 mutant having slow hydrolysis product release 5,6 . Primed actomyosin was predominantly captured 10 ms after mixing primed myosin with F-actin, whereas post-powerstroke actomyosin predominated at 120 ms, with no abundant intermediate states detected. For detailed interpretation, cryo-EM maps were fitted with pseudo-atomic models. Small but critical changes accompany the primed motor binding to actin through its lower 50-kDa subdomain, with the actin-binding cleft open and phosphate release prohibited. Amino-terminal actin interactions with myosin promote rotation of the upper 50-kDa subdomain, closing the actin-binding cleft, and enabling phosphate release. The formation of interactions between the upper 50-kDa subdomain and actin creates the strong-binding interface needed for effective force production. The myosin-5 lever swings through 93°, predominantly along the actin axis, with little twisting. The magnitude of lever swing matches the typical step length of myosin-5 along actin 7 . These time-resolved structures demonstrate the swinging lever mechanism, elucidate structural transitions of the power stroke, and resolve decades of conjecture on how myosins generate movement.


  • Organizational Affiliation
    • School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, UK.

Macromolecule Content 

  • Total Structure Weight: 214.81 kDa 
  • Atom Count: 14,790 
  • Modeled Residue Count: 1,849 
  • Deposited Residue Count: 1,887 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Unconventional myosin-Va759Mus musculusMutation(s): 1 
Gene Names: Myo5aDilute
UniProt & NIH Common Fund Data Resources
Find proteins for Q99104 (Mus musculus)
Explore Q99104 
Go to UniProtKB:  Q99104
IMPC:  MGI:105976
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99104
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin, alpha skeletal muscle
B, C, D
376Oryctolagus cuniculusMutation(s): 1 
EC: 3.6.4
UniProt
Find proteins for P68135 (Oryctolagus cuniculus)
Explore P68135 
Go to UniProtKB:  P68135
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP68135
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
(Subject of Investigation/LOI)

Query on ADP



Download:Ideal Coordinates CCD File
F [auth A],
G [auth B],
I [auth C],
K [auth D]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
MG
(Subject of Investigation/LOI)

Query on MG



Download:Ideal Coordinates CCD File
E [auth A],
H [auth B],
J [auth C],
L [auth D]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--
Biotechnology and Biological Sciences Research Council (BBSRC)United Kingdom--
American Heart AssociationUnited States--
Medical Research Council (MRC, United Kingdom)United Kingdom--
British Heart FoundationUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release
  • Version 1.1: 2025-04-23
    Changes: Data collection, Database references
  • Version 1.2: 2025-06-25
    Changes: Data collection, Database references