8RB7

Structure of the two-fold capsomer of the PNMA2 capsid


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

PNMA2 forms immunogenic non-enveloped virus-like capsids associated with paraneoplastic neurological syndrome.

Xu, J.Erlendsson, S.Singh, M.Holling, G.A.Regier, M.Ibiricu, I.Einstein, J.Hantak, M.P.Day, G.S.Piquet, A.L.Smith, T.L.Clardy, S.L.Whiteley, A.M.Feschotte, C.Briggs, J.A.G.Shepherd, J.D.

(2024) Cell 187: 831

  • DOI: https://doi.org/10.1016/j.cell.2024.01.009
  • Primary Citation of Related Structures:  
    8RB3, 8RB4, 8RB5, 8RB7

  • PubMed Abstract: 

    The paraneoplastic Ma antigen (PNMA) proteins are associated with cancer-induced paraneoplastic syndromes that present with an autoimmune response and neurological symptoms. Why PNMA proteins are associated with this severe autoimmune disease is unclear. PNMA genes are predominantly expressed in the central nervous system and are ectopically expressed in some tumors. We show that PNMA2, which has been co-opted from a Ty3 retrotransposon, encodes a protein that is released from cells as non-enveloped virus-like capsids. Recombinant PNMA2 capsids injected into mice induce autoantibodies that preferentially bind external "spike" PNMA2 capsid epitopes, whereas a capsid-assembly-defective PNMA2 protein is not immunogenic. PNMA2 autoantibodies in cerebrospinal fluid of patients with anti-Ma2 paraneoplastic disease show similar preferential binding to spike capsid epitopes. PNMA2 capsid-injected mice develop learning and memory deficits. These observations suggest that PNMA2 capsids act as an extracellular antigen, capable of generating an autoimmune response that results in neurological deficits.


  • Organizational Affiliation

    Department of Neurobiology, University of Utah, Salt Lake City, UT, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Paraneoplastic antigen Ma2 homolog
A, B
180Mus musculusMutation(s): 0 
Gene Names: Pnma2
UniProt
Find proteins for Q8BHK0 (Mus musculus)
Explore Q8BHK0 
Go to UniProtKB:  Q8BHK0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8BHK0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTCoot0.9
MODEL REFINEMENTPHENIX1.20.1
MODEL REFINEMENTUCSF ChimeraX1.15
MODEL REFINEMENTISOLDE
RECONSTRUCTIONRELION4

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesNIH R01 NS115716
Medical Research Council (MRC, United Kingdom)United KingdomMC_UP_1201/16
Novo Nordisk FoundationDenmarkNNF17OC0030788

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-14
    Type: Initial release
  • Version 1.1: 2024-02-28
    Changes: Database references