8R7D

Complex of rice blast (Magnaporthe oryzae) mutant effector protein PWL2-SNDE with the HMA domain of OsHIPP43 from rice (Oryza sativa)

  • Classification: PLANT PROTEIN
  • Organism(s): Oryza sativa, Pyricularia oryzae
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2023-11-24 Released: 2024-01-31 
  • Deposition Author(s): Zdrzalek, R., Banfield, M.J.
  • Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC), European Research Council (ERC), Japan Society for the Promotion of Science (JSPS), Gatsby Charitable Foundation, John Innes Foundation

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.220 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Bioengineering a plant NLR immune receptor with a robust binding interface toward a conserved fungal pathogen effector.

Zdrzalek, R.Xi, Y.Langner, T.Bentham, A.R.Petit-Houdenot, Y.De la Concepcion, J.C.Harant, A.Shimizu, M.Were, V.Talbot, N.J.Terauchi, R.Kamoun, S.Banfield, M.J.

(2024) Proc Natl Acad Sci U S A 121: e2402872121-e2402872121

  • DOI: https://doi.org/10.1073/pnas.2402872121
  • Primary Citation of Related Structures:  
    8R7A, 8R7D

  • PubMed Abstract: 

    Bioengineering of plant immune receptors has emerged as a key strategy for generating novel disease resistance traits to counteract the expanding threat of plant pathogens to global food security. However, current approaches are limited by rapid evolution of plant pathogens in the field and may lack durability when deployed. Here, we show that the rice nucleotide-binding, leucine-rich repeat (NLR) immune receptor Pik-1 can be engineered to respond to a conserved family of effectors from the multihost blast fungus pathogen Magnaporthe oryzae . We switched the effector binding and response profile of the Pik NLR from its cognate rice blast effector AVR-Pik to the host-determining factor pathogenicity toward weeping lovegrass 2 (Pwl2) by installing a putative host target, OsHIPP43, in place of the native integrated heavy metal-associated domain (generating Pikm-1 OsHIPP43 ). This chimeric receptor also responded to other PWL alleles from diverse blast isolates. The crystal structure of the Pwl2/OsHIPP43 complex revealed a multifaceted, robust interface that cannot be easily disrupted by mutagenesis, and may therefore provide durable, broad resistance to blast isolates carrying PWL effectors in the field. Our findings highlight how the host targets of pathogen effectors can be used to bioengineer recognition specificities that have more robust properties compared to naturally evolved disease resistance genes.


  • Organizational Affiliation

    Department of Biochemistry and Metabolism, John Innes Centre, Norwich NR4 7UH, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Os01g0507700 protein
A, C
151Oryza sativaMutation(s): 0 
Gene Names: Os01g0507700
UniProt
Find proteins for Q8LJL3 (Oryza sativa subsp. japonica)
Explore Q8LJL3 
Go to UniProtKB:  Q8LJL3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8LJL3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Pwl2 protein
B, D
145Pyricularia oryzaeMutation(s): 4 
Gene Names: MGG_04301
UniProt
Find proteins for G5EI71 (Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958))
Explore G5EI71 
Go to UniProtKB:  G5EI71
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG5EI71
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.220 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.378α = 90
b = 66.804β = 90
c = 81.901γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
xia2data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/W00108X/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/WW002221/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/V002937/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/V016342
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/V015508/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/P012574
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBBS/E/J/000PR9795
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBBS/E/J/000PR9796
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/X010996/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M011216/1
European Research Council (ERC)European Union743165
Japan Society for the Promotion of Science (JSPS)Japan20H05681
Gatsby Charitable FoundationUnited Kingdom--
John Innes FoundationUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-31
    Type: Initial release
  • Version 1.1: 2024-07-17
    Changes: Database references