8R1R | pdb_00008r1r

Structure of the Diels Alderase TedJ, in complex with cofactor FAD

PDB DOI: https://doi.org/10.2210/pdb8R1R/pdb

Classification: OXIDOREDUCTASE
Organism(s): Streptomyces
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-11-02 Released: 2024-11-13
Deposition Author(s): Back, C.R., Race, P.R.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free:
0.244 (Depositor), 0.216 (DCC)
R-Value Work:
0.207 (Depositor), 0.214 (DCC)
R-Value Observed:
0.209 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

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Literature

The Diels-Alderase TedJ: Structure, Function and as a Biocatalyst for the Total Synthesis of the Antibiotic (-)-13-Deoxytetrodecamycin

Russell, J., Back, C.R., Perry, C., Cheung, K., Hayes, M.A., van der Kamp, M.W., Race, P.R., Willis, C.L.

To be published.

Macromolecule Content

Total Structure Weight: 53.8 kDa
Atom Count: 3,825
Modeled Residue Count: 492
Deposited Residue Count: 510
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Short-chain dehydrogenase/reductase	A	510	Streptomyces	Mutation(s): 0 Gene Names: tedJ
UniProt
Find proteins for A0ACD6B9Z2 (Streptomyces sp. WAC04657) Explore A0ACD6B9Z2 Go to UniProtKB: A0ACD6B9Z2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6B9Z2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD (Subject of Investigation/LOI) Query on FAD Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free: 0.244 (Depositor), 0.216 (DCC)
R-Value Work: 0.207 (Depositor), 0.214 (DCC)
R-Value Observed: 0.209 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.25	α = 90
b = 70.25	β = 90
c = 203.7	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-11-13

Deposition Author(s):

Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB/T001968/1
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB/M012107/1

Revision History (Full details and data files)

Version 1.0: 2024-11-13
Type: Initial release

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