8R0C

Crystal structure of Borneoldehydrogenase ancestor N32

• PDB DOI: https://doi.org/10.2210/pdb8R0C/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): synthetic construct
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2023-10-31 Released: 2024-10-09 
• Deposition Author(s): Helmer, C.P.O., Dimos, N., Loll, B.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free: 0.219 
• R-Value Work: 0.173 
• R-Value Observed: 0.175 

Starting Model: experimental

Literature

Crystal structure of Borneoldehydrogenase N32

Helmer, C.P.O., Dimos, N., Loll, B.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 117.94 kDa 
• Atom Count: 7,998 
• Modelled Residue Count: 1,011 
• Deposited Residue Count: 1,120 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Borneoldehydrogenase	A, B, C, D	280	synthetic construct	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	E [auth A], F [auth B], G [auth B], H [auth C]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.99 Å
• R-Value Free: 0.219 
• R-Value Work: 0.173 
• R-Value Observed: 0.175 
• Space Group: P 1 2₁ 1
• Diffraction Data: https://doi.org/10.18430/M38R0C

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.556	α = 90
b = 93.484	β = 105.57
c = 78.815	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-10-09 
Deposition Author(s): Helmer, C.P.O., Dimos, N., Loll, B.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	RTG 2473-1

Revision History  

• Version 1.0: 2024-10-09
  Type: Initial release