8QUG

KRAS-G12C in Complex with Compound 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.193 

Starting Model: other
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Targeting cancer with small-molecule pan-KRAS degraders.

Popow, J.Farnaby, W.Gollner, A.Kofink, C.Fischer, G.Wurm, M.Zollman, D.Wijaya, A.Mischerikow, N.Hasenoehrl, C.Prokofeva, P.Arnhof, H.Arce-Solano, S.Bell, S.Boeck, G.Diers, E.Frost, A.B.Goodwin-Tindall, J.Karolyi-Oezguer, J.Khan, S.Klawatsch, T.Koegl, M.Kousek, R.Kratochvil, B.Kropatsch, K.Lauber, A.A.McLennan, R.Olt, S.Peter, D.Petermann, O.Roessler, V.Stolt-Bergner, P.Strack, P.Strauss, E.Trainor, N.Vetma, V.Whitworth, C.Zhong, S.Quant, J.Weinstabl, H.Kuster, B.Ettmayer, P.Ciulli, A.

(2024) Science 385: 1338-1347

  • DOI: https://doi.org/10.1126/science.adm8684
  • Primary Citation of Related Structures:  
    8QU8, 8QUG, 8QVU, 8QW6, 8QW7

  • PubMed Abstract: 

    Mutations in the Kirsten rat sarcoma viral oncogene homolog (KRAS) protein are highly prevalent in cancer. However, small-molecule concepts that address oncogenic KRAS alleles remain elusive beyond replacing glycine at position 12 with cysteine (G12C), which is clinically drugged through covalent inhibitors. Guided by biophysical and structural studies of ternary complexes, we designed a heterobifunctional small molecule that potently degrades 13 out of 17 of the most prevalent oncogenic KRAS alleles. Compared with inhibition, KRAS degradation results in more profound and sustained pathway modulation across a broad range of KRAS mutant cell lines, killing cancer cells while sparing models without genetic KRAS aberrations. Pharmacological degradation of oncogenic KRAS was tolerated and led to tumor regression in vivo. Together, these findings unveil a new path toward addressing KRAS-driven cancers with small-molecule degraders.


  • Organizational Affiliation

    Boehringer Ingelheim RCV GmbH & Co KG, 1221 Vienna, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GTPase KRas170Homo sapiensMutation(s): 4 
Gene Names: KRASKRAS2RASK2
EC: 3.6.5.2
UniProt & NIH Common Fund Data Resources
Find proteins for P01116 (Homo sapiens)
Explore P01116 
Go to UniProtKB:  P01116
PHAROS:  P01116
GTEx:  ENSG00000133703 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01116
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.193 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.021α = 90
b = 91.021β = 90
c = 52.737γ = 90
Software Package:
Software NamePurpose
autoPROCdata reduction
XDSdata reduction
XDSdata reduction
autoPROCdata scaling
Aimlessdata scaling
BUSTERrefinement
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateAustriaBoehringer Ingelheim RCV

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-06
    Type: Initial release
  • Version 1.1: 2024-09-11
    Changes: Database references
  • Version 1.2: 2024-10-02
    Changes: Database references