8QLX | pdb_00008qlx

Magnaporthe grisea Woronin Body Major protein crystallized in cellulo

PDB DOI: https://doi.org/10.2210/pdb8QLX/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Pyricularia grisea
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2023-09-20 Released: 2024-10-02
Deposition Author(s): Boger, J., Redecke, L.
Funding Organization(s): German Federal Ministry for Education and Research

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.236 (Depositor), 0.233 (DCC)
R-Value Work:
0.212 (Depositor), 0.210 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8QLX

This is version 1.0 of the entry. See complete history.

Literature

Magnaporthe grisea Woronin Body Major protein crystallized in cellulo

Boger, J., Redecke, L.

To be published.

Macromolecule Content

Total Structure Weight: 20.01 kDa
Atom Count: 1,126
Modeled Residue Count: 139
Deposited Residue Count: 181
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative vacuolar ATPase MVP1	A	181	Pyricularia grisea	Mutation(s): 0 Gene Names: VATP
UniProt
Find proteins for Q9UW16 (Pyricularia grisea) Explore Q9UW16 Go to UniProtKB: Q9UW16
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UW16
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.236 (Depositor), 0.233 (DCC)
R-Value Work: 0.212 (Depositor), 0.210 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.66	α = 90
b = 57.66	β = 90
c = 187.89	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
CrystFEL	data reduction
CrystFEL	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-10-02

Deposition Author(s):

Funding Organization	Location	Grant Number
German Federal Ministry for Education and Research	Germany	05K18FLA

Revision History (Full details and data files)

Version 1.0: 2024-10-02
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.