8QKR

Plasmodium falciparum reticulocyte-binding protein homologue 5 (PfRH5) bound to R5.251


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.254 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Analysis of the diverse antigenic landscape of the malaria protein RH5 identifies a potent vaccine-induced human public antibody clonotype.

Barrett, J.R.Pipini, D.Wright, N.D.Cooper, A.J.R.Gorini, G.Quinkert, D.Lias, A.M.Davies, H.Rigby, C.A.Aleshnick, M.Williams, B.G.Bradshaw, W.J.Paterson, N.G.Martinson, T.Kirtley, P.Picard, L.Wiggins, C.D.Donnellan, F.R.King, L.D.W.Wang, L.T.Popplewell, J.F.Silk, S.E.de Ruiter Swain, J.Skinner, K.Kotraiah, V.Noe, A.R.MacGill, R.S.King, C.R.Birkett, A.J.Soisson, L.A.Minassian, A.M.Lauffenburger, D.A.Miura, K.Long, C.A.Wilder, B.K.Koekemoer, L.Tan, J.Nielsen, C.M.McHugh, K.Draper, S.J.

(2024) Cell 

  • DOI: https://doi.org/10.1016/j.cell.2024.06.015
  • Primary Citation of Related Structures:  
    8QKR, 8QKS

  • PubMed Abstract: 

    The highly conserved and essential Plasmodium falciparum reticulocyte-binding protein homolog 5 (PfRH5) has emerged as the leading target for vaccines against the disease-causing blood stage of malaria. However, the features of the human vaccine-induced antibody response that confer highly potent inhibition of malaria parasite invasion into red blood cells are not well defined. Here, we characterize 236 human IgG monoclonal antibodies, derived from 15 donors, induced by the most advanced PfRH5 vaccine. We define the antigenic landscape of this molecule and establish that epitope specificity, antibody association rate, and intra-PfRH5 antibody interactions are key determinants of functional anti-parasitic potency. In addition, we identify a germline IgG gene combination that results in an exceptionally potent class of antibody and demonstrate its prophylactic potential to protect against P. falciparum parasite challenge in vivo. This comprehensive dataset provides a framework to guide rational design of next-generation vaccines and prophylactic antibodies to protect against blood-stage malaria.


  • Organizational Affiliation

    Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK; Kavli Institute for Nanoscience Discovery, University of Oxford, Oxford OX1 3QU, UK; The Jenner Institute, University of Oxford, Oxford OX3 7DQ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Reticulocyte-binding protein-like protein 5
A, D
325Plasmodium falciparumMutation(s): 0 
Gene Names: Rh5
UniProt
Find proteins for A0A8F2YHP6 (Plasmodium falciparum)
Explore A0A8F2YHP6 
Go to UniProtKB:  A0A8F2YHP6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8F2YHP6
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
R5251VHCH
B, E
234Homo sapiensMutation(s): 0 
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
R5251VLCL
C, F
220Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.23 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.254 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.927α = 60.535
b = 92.016β = 72.132
c = 92.492γ = 79.818
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
University of Oxford, Medical Sciences Internal Fund (MSIF)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-31
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Database references