A cyclic-nucleotide binding membrane protein provides CRISPR-mediated antiphage defence in Vibrio cholera
McMahon, S.A., McQuarrie, S., Gloster, T.M., White, M.F., Gruschow, S., Ackermann, K., Bode, B.E.To be published.
Experimental Data Snapshot
Starting Model: in silico
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
csx23 | 96 | Vibrio cholerae | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
Cyclic tetraadenosine monophosphate (cA4) | B [auth C] | 4 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ACE Query on ACE | C [auth A], D [auth A] | ACETYL GROUP C2 H4 O IKHGUXGNUITLKF-UHFFFAOYSA-N | |||
NA Query on NA | E [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_002431 Query on PRD_002431 | B [auth C] | Cyclic tetraadenosine monophosphate (cA4) | Polycyclic / Antiviral |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 66.425 | α = 90 |
b = 66.425 | β = 90 |
c = 42.479 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
autoPROC | data reduction |
STARANISO | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/T004789/1 |