8Q5Z | pdb_00008q5z

Crystal structure of bovine Thiosulfate sulfurtransferase

PDB DOI: https://doi.org/10.2210/pdb8Q5Z/pdb
Entry: 8Q5Z supersedes: 8BGQ

Classification: STRUCTURAL PROTEIN
Organism(s): Bos taurus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-08-10 Released: 2023-09-20
Deposition Author(s): Goor, H.v., Groves, M.R., AL-Dahmani, Z.M., Wang, C.
Funding Organization(s): Dutch Kidney Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.163 (Depositor), 0.163 (DCC)
R-Value Work:
0.146 (Depositor), 0.146 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8Q5Z

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of bovine Thiosulfate sulfurtransferase

AL-Dahmani, Z.M., Groves, M.R., Goo, H.v.

To be published.

Macromolecule Content

Total Structure Weight: 33.36 kDa
Atom Count: 2,640
Modeled Residue Count: 291
Deposited Residue Count: 297
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thiosulfate sulfurtransferase	A	297	Bos taurus	Mutation(s): 0 Gene Names: TST EC: 2.8.1.1
UniProt
Find proteins for P00586 (Bos taurus) Explore P00586 Go to UniProtKB: P00586
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00586
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NA Query on NA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.163 (Depositor), 0.163 (DCC)
R-Value Work: 0.146 (Depositor), 0.146 (DCC)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 153.857	α = 90
b = 49.506	β = 98.504
c = 41.863	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-09-20

Deposition Author(s):

AL-Dahmani, Z.M.

This entry supersedes: 8BGQ

Funding Organization	Location	Grant Number
Dutch Kidney Foundation	Netherlands	--

Revision History (Full details and data files)

Version 1.0: 2023-09-20
Type: Initial release
Version 1.1: 2024-02-14
Changes: Advisory

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.