8Q5D

PfRH5 bound to monoclonal antibody MAD10-466

• PDB DOI: https://doi.org/10.2210/pdb8Q5D/pdb

• Classification: CELL ADHESION
• Organism(s): Plasmodium falciparum 3D7, Homo sapiens
• Expression System: Drosophila melanogaster, Homo sapiens
• Mutation(s): No 


• Deposited: 2023-08-08 Released: 2024-06-05 
• Deposition Author(s): Farrell, B., Higgins, M.K.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free: 0.317 
• R-Value Work: 0.272 
• R-Value Observed: 0.274 

Starting Model: experimental

Literature

PfRH5 bound to monoclonal antibody MAD10-466

Farrell, B., Higgins, M.K.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 175.8 kDa 
• Atom Count: 11,181 
• Modelled Residue Count: 1,407 
• Deposited Residue Count: 1,548 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PfRH5	A, D	338	Plasmodium falciparum 3D7	Mutation(s): 0
UniProt
Find proteins for Q8IFM5 (Plasmodium falciparum (isolate 3D7)) Explore Q8IFM5  Go to UniProtKB:  Q8IFM5

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoclonal antibody MAD10-466 heavy chain	B, E	221	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Monoclonal antibody MAD10-466 light chain	C, F	215	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.20 Å
• R-Value Free: 0.317 
• R-Value Work: 0.272 
• R-Value Observed: 0.274 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.464	α = 90
b = 140.414	β = 112.74
c = 83.616	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
PDB_EXTRACT	data extraction
xia2	data reduction
DIALS	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-05 
Deposition Author(s): Farrell, B., Higgins, M.K.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	220797/Z/20/Z

Revision History  

• Version 1.0: 2024-06-05
  Type: Initial release