Crystal structures of Endothiapepsin with ligands derived from merged fragment hits
Mueller, J.M.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Endothiapepsin | 330 | Cryphonectria parasitica | Mutation(s): 0  EC: 3.4.23.22 | ![]() | |
UniProt | |||||
Find proteins for P11838 (Cryphonectria parasitica) Explore P11838  Go to UniProtKB:  P11838 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11838 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IJY (Subject of Investigation/LOI) Query on IJY | B [auth A] | (3~{R},5~{R})-3-[2-(hydroxymethyl)-1,3-thiazol-4-yl]-5-[3-[4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl]pyrrolidin-3-ol C17 H15 F3 N4 O3 S CNTLIYFLZNNGNX-BDJLRTHQSA-N | |||
PGE Query on PGE | K [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
MPD Query on MPD | J [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
PEG Query on PEG | G [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
DMS Query on DMS | C [auth A], D [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
ACT Query on ACT | E [auth A], F [auth A], H [auth A], I [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 44.857 | α = 90 |
b = 72.472 | β = 109.17 |
c = 52.427 | γ = 90 |
Software Name | Purpose |
---|---|
Coot | model building |
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Not funded | -- |