8PXF

Crystal structure of the full length Hh1412 Dsb homodimer.

PDB DOI: https://doi.org/10.2210/pdb8PXF/pdb

Classification: OXIDOREDUCTASE
Organism(s): Helicobacter hepaticus ATCC 51449
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-07-23 Released: 2024-08-07
Deposition Author(s): Wilk, P., Orlikowska, M., Roszczenko-Jasinska, P., Jagusztyn-Krynicka, E.K.
Funding Organization(s): Polish National Science Centre

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free: 0.264
R-Value Work: 0.230
R-Value Observed: 0.232

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structures of Disulfide oxidoreductase/isomerase from Helicobacter hepaticus.

Roszczenko-Jasinska, P.

To be published.

Macromolecule Content

Total Structure Weight: 48.7 kDa
Atom Count: 3,370
Modelled Residue Count: 428
Deposited Residue Count: 436
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Disulfide bond oxidoreductase/isomerase	A, B	218	Helicobacter hepaticus ATCC 51449	Mutation(s): 0 Gene Names: HH_1412
UniProt
Find proteins for Q7VGB0 (Helicobacter hepaticus (strain ATCC 51449 / 3B1)) Explore Q7VGB0 Go to UniProtKB: Q7VGB0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q7VGB0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free: 0.264
R-Value Work: 0.230
R-Value Observed: 0.232
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.26	α = 90
b = 87.26	β = 90
c = 130.52	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2024-08-07

Deposition Author(s):

Roszczenko-Jasinska, P.

Jagusztyn-Krynicka, E.K.

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2018/29/B/NZ1/00140

Revision History (Full details and data files)

Version 1.0: 2024-08-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.