8PXD | pdb_00008pxd

Crystal structure of the C-terminal domain of Hh1412

PDB DOI: https://doi.org/10.2210/pdb8PXD/pdb

Classification: OXIDOREDUCTASE
Organism(s): Helicobacter hepaticus ATCC 51449
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-07-23 Released: 2024-08-07
Deposition Author(s): Wilk, P., Orlikowska, M., Roszczenko-Jasinska, P., Jagusztyn-Krynicka, E.K.
Funding Organization(s): Polish National Science Centre

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.250 (Depositor), 0.252 (DCC)
R-Value Work:
0.191 (Depositor), 0.199 (DCC)
R-Value Observed:
0.194 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Crystal structures of Disulfide oxidoreductase/isomerase from Helicobacter hepaticus.

Roszczenko-Jasinska, P.

To be published.

Macromolecule Content

Total Structure Weight: 24.35 kDa
Atom Count: 1,099
Modeled Residue Count: 133
Deposited Residue Count: 218
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Disulfide bond oxidoreductase/isomerase - Dsb	A	218	Helicobacter hepaticus ATCC 51449	Mutation(s): 0 Gene Names: HH_1412
UniProt
Find proteins for Q7VGB0 (Helicobacter hepaticus (strain ATCC 51449 / 3B1)) Explore Q7VGB0 Go to UniProtKB: Q7VGB0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7VGB0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.250 (Depositor), 0.252 (DCC)
R-Value Work: 0.191 (Depositor), 0.199 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.7	α = 90
b = 64.48	β = 90
c = 119.54	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
MoRDa	phasing
XDS	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-08-07

Deposition Author(s):

Roszczenko-Jasinska, P.

Jagusztyn-Krynicka, E.K.

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2018/29/B/NZ1/00140

Revision History (Full details and data files)

Version 1.0: 2024-08-07
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.