8PVQ

Crystal Structure of Human PTX3 C-terminal domain

  • Classification: IMMUNE SYSTEM
  • Organism(s): Homo sapiens
  • Expression System: Cricetulus griseus
  • Mutation(s): No 

  • Deposited: 2023-07-18 Released: 2024-07-24 
  • Deposition Author(s): Levy, C.W.
  • Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.219 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Pentraxin 3 mediated crosslinking of heavy chain hyaluronan complexes: new insights from structural and biophysical studies

Shah, A., Zhang, X., Lockhart-Cairns, M.P., Levy, C.W., Jowitt, T.A., Birchenough, H., Dean, L., Collins, R., Dodd, R.J., Inforzato, A., Fontana, J., Baldock, C., Richter, R.P., Day, A.J.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Pentraxin-related protein PTX3207Homo sapiensMutation(s): 0 
Gene Names: PTX3, TNFAIP5, TSG14
UniProt & NIH Common Fund Data Resources
Find proteins for P26022 (Homo sapiens)
Explore P26022 
Go to UniProtKB:  P26022
PHAROS:  P26022
GTEx:  ENSG00000163661 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26022
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.219 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 138.003α = 90
b = 138.003β = 90
c = 69.55γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
DIALSdata scaling
PHASERphasing

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

  • Released Date: 2024-07-24 
    • Deposition Author(s): Levy, C.W.
Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T001542/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T017643/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-24
    Type: Initial release