8PRU | pdb_00008pru

Engineered form of T thermophiles AHIR

PDB DOI: https://doi.org/10.2210/pdb8PRU/pdb

Classification: OXIDOREDUCTASE
Organism(s): Thermus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-07-12 Released: 2024-09-25
Deposition Author(s): Roberts, M., Powell, A., Lewis, C., Sinclair, J.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.288 (Depositor), 0.290 (DCC)
R-Value Work:
0.259 (Depositor), 0.262 (DCC)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 8PRU

This is version 1.0 of the entry. See complete history.

Literature

Engineered form of T thermophiles AHIR

Roberts, M., Powell, A., Lewis, C., Sinclair, J.

To be published.

Macromolecule Content

Total Structure Weight: 228.32 kDa
Atom Count: 14,736
Modeled Residue Count: 1,866
Deposited Residue Count: 2,076
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ketol-acid reductoisomerase (NADP(+))	A, B, C, D, E A, B, C, D, E, F	346	Thermus	Mutation(s): 0 Gene Names: ilvC, TT_C0850 EC: 1.1.1.86
UniProt
Find proteins for Q72JC8 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)) Explore Q72JC8 Go to UniProtKB: Q72JC8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q72JC8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain M [auth D] SDF format, chain K [auth C] SDF format, chain I [auth B] SDF format, chain H [auth B] MOL2 format, chain M [auth D] MOL2 format, chain K [auth C] MOL2 format, chain I [auth B] MOL2 format, chain H [auth B] mmCIF format, chain M [auth D] mmCIF format, chain K [auth C] mmCIF format, chain I [auth B] mmCIF format, chain H [auth B]	H [auth B], I [auth B], K [auth C], M [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain H [auth B] Focus chain I [auth B] Focus chain K [auth C] Focus chain M [auth D] Interactions & Density Focus chain H [auth B] Focus chain I [auth B] Focus chain K [auth C] Focus chain M [auth D]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain O [auth F] SDF format, chain N [auth E] SDF format, chain L [auth D] SDF format, chain J [auth C] SDF format, chain G [auth A] MOL2 format, chain O [auth F] MOL2 format, chain N [auth E] MOL2 format, chain L [auth D] MOL2 format, chain J [auth C] MOL2 format, chain G [auth A] mmCIF format, chain O [auth F] mmCIF format, chain N [auth E] mmCIF format, chain L [auth D] mmCIF format, chain J [auth C] mmCIF format, chain G [auth A]	G [auth A], J [auth C], L [auth D], N [auth E], O [auth F]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain J [auth C] Focus chain L [auth D] Focus chain N [auth E] Focus chain O [auth F] Interactions & Density Focus chain G [auth A] Focus chain J [auth C] Focus chain L [auth D] Focus chain N [auth E] Focus chain O [auth F]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.288 (Depositor), 0.290 (DCC)
R-Value Work: 0.259 (Depositor), 0.262 (DCC)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 136.03	α = 90
b = 142.72	β = 90
c = 126.13	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded	United Kingdom	--

Revision History (Full details and data files)

Version 1.0: 2024-09-25
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.