8PR2

Cytoplasmic dynein-1 heavy chain bound to JIP3-LZI


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular mechanism of dynein-dynactin complex assembly by LIS1.

Singh, K.Lau, C.K.Manigrasso, G.Gama, J.B.Gassmann, R.Carter, A.P.

(2024) Science 383: eadk8544-eadk8544

  • DOI: https://doi.org/10.1126/science.adk8544
  • Primary Citation of Related Structures:  
    8PQV, 8PQW, 8PQY, 8PQZ, 8PR0, 8PR1, 8PR2, 8PR3, 8PR4, 8PR5, 8PTK

  • PubMed Abstract: 

    Cytoplasmic dynein is a microtubule motor vital for cellular organization and division. It functions as a ~4-megadalton complex containing its cofactor dynactin and a cargo-specific coiled-coil adaptor. However, how dynein and dynactin recognize diverse adaptors, how they interact with each other during complex formation, and the role of critical regulators such as lissencephaly-1 (LIS1) protein (LIS1) remain unclear. In this study, we determined the cryo-electron microscopy structure of dynein-dynactin on microtubules with LIS1 and the lysosomal adaptor JIP3. This structure reveals the molecular basis of interactions occurring during dynein activation. We show how JIP3 activates dynein despite its atypical architecture. Unexpectedly, LIS1 binds dynactin's p150 subunit, tethering it along the length of dynein. Our data suggest that LIS1 and p150 constrain dynein-dynactin to ensure efficient complex formation.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
C-Jun-amino-terminal kinase-interacting protein 3A [auth B],
B [auth C]
581Homo sapiensMutation(s): 0 
Gene Names: MAPK8IP3JIP3KIAA1066
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Find proteins for Q9UPT6 (Homo sapiens)
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Go to UniProtKB:  Q9UPT6
PHAROS:  Q9UPT6
GTEx:  ENSG00000138834 
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UniProt GroupQ9UPT6
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cytoplasmic dynein 1 heavy chain 1C [auth f],
F [auth m]
4,646Homo sapiensMutation(s): 2 
Gene Names: DYNC1H1DHC1DNCH1DNCLDNECLDYHCKIAA0325
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Find proteins for Q14204 (Homo sapiens)
Explore Q14204 
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PHAROS:  Q14204
GTEx:  ENSG00000197102 
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UniProt GroupQ14204
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cytoplasmic dynein 1 intermediate chain 2D [auth h]612Homo sapiensMutation(s): 0 
Gene Names: DYNC1I2DNCI2DNCIC2
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Find proteins for Q13409 (Homo sapiens)
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PHAROS:  Q13409
GTEx:  ENSG00000077380 
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UniProt GroupQ13409
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Cytoplasmic dynein 1 light intermediate chain 2E [auth j]492Homo sapiensMutation(s): 0 
Gene Names: DYNC1LI2DNCLI2LIC2
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Find proteins for O43237 (Homo sapiens)
Explore O43237 
Go to UniProtKB:  O43237
PHAROS:  O43237
GTEx:  ENSG00000135720 
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UniProt GroupO43237
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20_4459:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom210711/Z/18/Z
Medical Research Council (MRC, United Kingdom)United KingdomMC_UP_A025_1011
European Molecular Biology Organization (EMBO)European UnionALTF 197-2021

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-27
    Type: Initial release
  • Version 1.1: 2024-04-10
    Changes: Database references