Download MendeleyDNA triplex structure with bound ruthenium polypyridyl complexes
Abdullrahman, A., McQuaid, K., Cardin, C.J., Hall, J.P.To be published.
8PIP
DNA triplex structure with Polypyridyl Ruthenium Complexes
- PDB DOI: https://doi.org/10.2210/pdb8PIP/pdb
- Classification: DNA
- Organism(s): synthetic construct
- Mutation(s): No
- Deposited: 2023-06-22 Released: 2024-07-10
- Funding Organization(s): H2020 Marie Curie Actions of the European Commission
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.259
- R-Value Work: 0.229
- R-Value Observed: 0.231
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (31-MER) | 31 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RKP Query on RKP | D [auth A] | Lambda-Ru(phen)2(dppz) complex C42 H26 N8 Ru OYSRBLHMGIHFCB-UHFFFAOYSA-N |  | ||
| 0TN Query on 0TN | B [auth A], C [auth A] | Delta-Ru(phen)2(dppz) complex C42 H26 N8 Ru OYSRBLHMGIHFCB-UHFFFAOYSA-N |  | ||
| CL (Subject of Investigation/LOI) Query on CL | E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.259
- R-Value Work: 0.229
- R-Value Observed: 0.231
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 37.464 | α = 90 |
| b = 86.151 | β = 90 |
| c = 87.852 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| CrysalisPro | data reduction |
| Aimless | data scaling |
| SHELXDE | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-07-10 Deposition Author(s): Abdullrahman, A., Cardin, C.J., Hall, J.P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| H2020 Marie Curie Actions of the European Commission | European Union | H2020-MSCA-ITN-2019-861381 |
Revision History (Full details and data files)
- Version 1.0: 2024-07-10
Type: Initial release
