8PE8 | pdb_00008pe8

Symmetry expanded D7 local refined map of mitochondrial heat-shock protein 60-like protein from Chaetomium thermophilum

PDB DOI: https://doi.org/10.2210/pdb8PE8/pdb
EM Map EMD-17629: EMDB EMDataResource

Classification: CHAPERONE
Organism(s): Thermochaetoides thermophila
Mutation(s): No

Deposited: 2023-06-13 Released: 2023-08-16
Deposition Author(s): Semchonok, D.A., Kyrilis, F.L., Hamdi, F., Kastritis, P.L.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Symmetry expanded D7, locally refined cryo-EM map of mitochondrial heat shock protein 60-like protein Chaetomium thermophilum.

Semchonok, D.A., Kyrilis, F.L., Hamdi, F., Kastritis, P.L.

To be published.

Macromolecule Content

Total Structure Weight: 849.37 kDa
Atom Count: 54,782
Modeled Residue Count: 7,392
Deposited Residue Count: 8,050
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial heat shock protein 60-like protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	575	Thermochaetoides thermophila	Mutation(s): 0
UniProt
Find proteins for G0RYB3 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0RYB3 Go to UniProtKB: G0RYB3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G0RYB3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.46 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1-4487
RECONSTRUCTION	cryoSPARC	3.2

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-08-16

Deposition Author(s):

Semchonok, D.A.

Kastritis, P.L.

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-08-16
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.