8P3C

Full length structure of BpMIP with bound inhibitor NJS227.

• PDB DOI: https://doi.org/10.2210/pdb8P3C/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Burkholderia pseudomallei
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-05-17 Released: 2024-06-12 
• Deposition Author(s): Whittaker, J.J., Guskov, A., Goretzki, B., Hellmich, U.A.
• Funding Organization(s): German Research Foundation (DFG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.02 Å
• R-Value Free: 0.235 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 

Starting Model: experimental

Literature

Structural dynamics of macrophage infectivity potentiator proteins (MIPs) are differentially modulated by inhibitors and appendage domains

Whittaker, J.J., Guskov, A., Goretzki, B., Hellmich, U.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: NMR relaxation study

Macromolecule Content

• Total Structure Weight: 14.47 kDa 
• Atom Count: 1,099 
• Modelled Residue Count: 126 
• Deposited Residue Count: 126 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase	A [auth B]	126	Burkholderia pseudomallei	Mutation(s): 0  Gene Names: fbp, BPSS1823 EC: 5.2.1.8
UniProt
Find proteins for Q63J95 (Burkholderia pseudomallei (strain K96243)) Explore Q63J95  Go to UniProtKB:  Q63J95

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
WRX	B	(2~{S})-1-[(4-fluorophenyl)methylsulfonyl]-~{N}-[(2~{S})-3-(4-fluorophenyl)-1-oxidanylidene-1-(pyridin-3-ylmethylamino)propan-2-yl]piperidine-2-carboxamide C28 H30 F2 N4 O4 S FCUDWGSHVIZNIL-UIOOFZCWSA-N
PEG	E [auth B]	DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N
GOL	C [auth B], D [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.02 Å
• R-Value Free: 0.235 
• R-Value Work: 0.194 
• R-Value Observed: 0.196 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.608	α = 90
b = 77.608	β = 90
c = 52.995	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-12 
Deposition Author(s): Whittaker, J.J., Guskov, A., Goretzki, B., Hellmich, U.A.

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Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	390713860

Revision History  

• Version 1.0: 2024-06-12
  Type: Initial release