Cryo-EM structure of Phthaloyl-CoA decarboxylase (Pcd) bound with substrate analog/inhibitor, 2-CN-benzoyl-CoA
Kayastha, K., Ermler, U.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Phthaloyl-CoA decarboxylase (Pcd) | 514 | Thauera chlorobenzoica | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A193DUB4 (Thauera chlorobenzoica) Explore A0A193DUB4  Go to UniProtKB:  A0A193DUB4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A193DUB4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
WC8 (Subject of Investigation/LOI) Query on WC8 | FA [auth E] H [auth A] LA [auth F] N [auth B] T [auth C] | 2-CN-benzoyl coenzyme A C29 H39 N8 O17 P3 S MIPLNNKTEVNXDG-LRGQMUBBSA-N | |||
BYN (Subject of Investigation/LOI) Query on BYN | EA [auth E] G [auth A] KA [auth F] M [auth B] S [auth C] | hydroxylated prenyl-FMN C22 H31 N4 O10 P BDNVCRCOZIAGID-LWGWVAHUSA-N | |||
FE (Subject of Investigation/LOI) Query on FE | AA [auth D] BA [auth D] GA [auth E] HA [auth E] I [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
CA (Subject of Investigation/LOI) Query on CA | DA [auth D] JA [auth E] L [auth A] PA [auth F] R [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
K (Subject of Investigation/LOI) Query on K | CA [auth D] IA [auth E] K [auth A] OA [auth F] Q [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.14 |
RECONSTRUCTION | RELION | 3.1 |
Funding Organization | Location | Grant Number |
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Max Planck Society | Germany | -- |