Crystal structure of Geodia cydonium sponge adhesion molecule long form (SAML).
Lopez-Sagaseta, J., Urdiciain, A.To be published.
Experimental Data Snapshot
Starting Model: in silico
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cell recognition molecule, long form | 232 | Geodia cydonium | Mutation(s): 0  Gene Names: crml | ![]() | |
UniProt | |||||
Find proteins for Q9U965 (Geodia cydonium) Explore Q9U965  Go to UniProtKB:  Q9U965 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9U965 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
SO4 Query on SO4 | Q [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 33.08 | α = 90 |
b = 41.16 | β = 90.009 |
c = 77.801 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Spanish Ministry of Science, Innovation, and Universities | Spain | Margarita Salas |
Spanish Ministry of Science, Innovation, and Universities | Spain | RYC-2017-21683 |