8OL6 | pdb_00008ol6

Murine type II Abeta fibril from tgAPPSwe mouse


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 8OL6

This is version 1.1 of the entry. See complete history

Literature

Cryo-EM of A beta fibrils from mouse models find tg-APP ArcSwe fibrils resemble those found in patients with sporadic Alzheimer's disease.

Zielinski, M.Peralta Reyes, F.S.Gremer, L.Schemmert, S.Frieg, B.Schafer, L.U.Willuweit, A.Donner, L.Elvers, M.Nilsson, L.N.G.Syvanen, S.Sehlin, D.Ingelsson, M.Willbold, D.Schroder, G.F.

(2023) Nat Neurosci 26: 2073-2080

  • DOI: https://doi.org/10.1038/s41593-023-01484-4
  • Primary Citation Related Structures: 
    8OL2, 8OL3, 8OL5, 8OL6, 8OL7, 8OLG, 8OLN, 8OLO, 8OLQ

  • PubMed Abstract: 

    The use of transgenic mice displaying amyloid-β (Aβ) brain pathology has been essential for the preclinical assessment of new treatment strategies for Alzheimer's disease. However, the properties of Aβ in such mice have not been systematically compared to Aβ in the brains of patients with Alzheimer's disease. Here, we determined the structures of nine ex vivo Aβ fibrils from six different mouse models by cryogenic-electron microscopy. We found novel Aβ fibril structures in the APP/PS1, ARTE10 and tg-SwDI models, whereas the human type II filament fold was found in the ARTE10, tg-APP Swe and APP23 models. The tg-APP ArcSwe mice showed an Aβ fibril whose structure resembles the human type I filament found in patients with sporadic Alzheimer's disease. A detailed assessment of the Aβ fibril structure is key to the selection of adequate mouse models for the preclinical development of novel plaque-targeting therapeutics and positron emission tomography imaging tracers in Alzheimer's disease.


  • Organizational Affiliation
    • Institute of Biological Information Processing, Structural Biochemistry (IBI-7), Forschungszentrum Jülich, Jülich, Germany.

Macromolecule Content 

  • Total Structure Weight: 45.2 kDa 
  • Atom Count: 2,260 
  • Modeled Residue Count: 310 
  • Deposited Residue Count: 420 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Amyloid-beta protein 42
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J
42Homo sapiensMutation(s): 0 
Gene Names: APPA4AD1
UniProt & NIH Common Fund Data Resources
Find proteins for P05067 (Homo sapiens)
Explore P05067 
Go to UniProtKB:  P05067
PHAROS:  P05067
GTEx:  ENSG00000142192 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05067
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Federal Ministry for Education and ResearchGermany16LW028
Swedish Research CouncilSweden2021-02793
Swedish Research CouncilSweden2021-01083
Swedish Research CouncilSweden2021-03524
Helmholtz AssociationGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-29
    Type: Initial release
  • Version 1.1: 2023-12-13
    Changes: Database references