8OK1 | pdb_00008ok1

WD repeat containing protein 5 (WDR5)- N225A mutant

PDB DOI: https://doi.org/10.2210/pdb8OK1/pdb

Classification: GENE REGULATION
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-03-26 Released: 2024-04-03
Deposition Author(s): Wolf, E., Boergel, A.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.38 Å
R-Value Free:
0.218 (Depositor), 0.172 (DCC)
R-Value Work:
0.194 (Depositor), 0.148 (DCC)
R-Value Observed:
0.195 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

A structural competition involving WDR5 times circadian oscillations

Wolf, E., Boergel, A., Rawleigh, A., Conrady, M., Hof, F., Ricci, K., Brown, S.

To be published.

Macromolecule Content

Total Structure Weight: 62.63 kDa
Atom Count: 2,594
Modeled Residue Count: 302
Deposited Residue Count: 555
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase class-mu 26 kDa isozyme,WD repeat-containing protein 5	A	555	Mus musculus	Mutation(s): 0 EC: 2.5.1.18
UniProt
Find proteins for P08515 (Schistosoma japonicum) Explore P08515 Go to UniProtKB: P08515
Find proteins for P61965 (Mus musculus) Explore P61965 Go to UniProtKB: P61965
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	P08515 P61965
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.38 Å
R-Value Free: 0.218 (Depositor), 0.172 (DCC)
R-Value Work: 0.194 (Depositor), 0.148 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.498	α = 90
b = 98.134	β = 90
c = 80.055	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-04-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded	Germany	--

Revision History (Full details and data files)

Version 1.0: 2024-04-03
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.