8OIO

Crystal structure of the kelch domain of human KLHL12 in complex with PLEKHA4 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Crystal structure of the kelch domain of human KLHL12 in complex with PLEKHA4 peptide

Dalietou, E.V.Chen, Z.Ramdass, A.E.Manning, C.Richardson, W.Aitmakhanova, K.Platt, M.Pike, A.C.W.Fedorov, O.Brennan, P.Bullock, A.N.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Kelch-like protein 12
A, B, C, D
301Homo sapiensMutation(s): 0 
Gene Names: KLHL12C3IP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q53G59 (Homo sapiens)
Explore Q53G59 
Go to UniProtKB:  Q53G59
PHAROS:  Q53G59
GTEx:  ENSG00000117153 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ53G59
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Pleckstrin homology domain-containing family A member 4E [auth F],
F [auth G],
G [auth H],
H [auth E]
11Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H4M7 (Homo sapiens)
Explore Q9H4M7 
Go to UniProtKB:  Q9H4M7
PHAROS:  Q9H4M7
GTEx:  ENSG00000105559 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H4M7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download Ideal Coordinates CCD File 
I [auth A],
N [auth B],
O [auth B],
P [auth B],
Q [auth C]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
J [auth B]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA
Query on NA

Download Ideal Coordinates CCD File 
K [auth B],
L [auth B],
M [auth B]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.469α = 90
b = 73.086β = 98.81
c = 103.734γ = 90
Software Package:
Software NamePurpose
autoPROCdata processing
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
STARANISOdata scaling
pointlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T008784/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-03
    Type: Initial release
  • Version 2.0: 2024-04-17
    Changes: Advisory, Atomic model, Structure summary
  • Version 2.1: 2024-04-24
    Changes: Database references, Structure summary