Crystal structure of UDP/mannose-bound AGO61/beta-1,4-N-Acetylglucosaminyltransferase 2 (POMGNT2)
Satoh, T., Umezawa, F., Yagi, H., Kato, K.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | 558 | Homo sapiens | Mutation(s): 0  Gene Names: POMGNT2, AGO61, C3orf39, EOGTL, GTDC2 EC: 2.4.1.312 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8NAT1 (Homo sapiens) Explore Q8NAT1  Go to UniProtKB:  Q8NAT1 | |||||
PHAROS:  Q8NAT1 GTEx:  ENSG00000144647  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8NAT1 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: Q8NAT1-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UDP (Subject of Investigation/LOI) Query on UDP | E [auth A], J [auth B], N [auth C], S [auth D] | URIDINE-5'-DIPHOSPHATE C9 H14 N2 O12 P2 XCCTYIAWTASOJW-XVFCMESISA-N | |||
NAG Query on NAG | F [auth A] G [auth A] K [auth B] O [auth C] P [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
MAN (Subject of Investigation/LOI) Query on MAN | H [auth A], L [auth B], Q [auth C], U [auth D] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | |||
CL Query on CL | I [auth A], M [auth B], R [auth C], V [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 145.019 | α = 90 |
b = 150.002 | β = 90 |
c = 191.481 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
AutoSol | phasing |
Funding Organization | Location | Grant Number |
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Japan Agency for Medical Research and Development (AMED) | Japan | 23gm6410010h0004 |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | JP19H03361 |