8K48

LTD of arabidopsis thaliana

• PDB DOI: https://doi.org/10.2210/pdb8K48/pdb

• Classification: PHOTOSYNTHESIS
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-07-17 Released: 2024-07-24 
• Deposition Author(s): Wang, C., Xu, X.M.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.245 
• R-Value Work: 0.228 

Starting Model: in silico

Literature

Structure of Arabidopsis thaliana LTD

Xu, X.M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 50.94 kDa 
• Atom Count: 3,137 
• Modelled Residue Count: 378 
• Deposited Residue Count: 452 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein LHCP TRANSLOCATION DEFECT	A, B, C, D	113	Arabidopsis thaliana	Mutation(s): 0  Gene Names: LTD, GDC1, At1g50900, F8A12.12
UniProt
Find proteins for Q8VY88 (Arabidopsis thaliana) Explore Q8VY88  Go to UniProtKB:  Q8VY88

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.245 
• R-Value Work: 0.228 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.776	α = 90
b = 63.776	β = 90
c = 225.397	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
HKL-2000	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-24 
Deposition Author(s): Wang, C., Xu, X.M.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32170258

Revision History  

• Version 1.0: 2024-07-24
  Type: Initial release