8K23

ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry

Zhang, L.X., Feng, Y.

To be published.

Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Csy1A [auth B],
S [auth b]		177Vibrio phage ICP1_2004_AMutation(s): 0 
Gene Names: TUST1-10_00450
UniProt
Find proteins for F1D5V8 (Vibrio phage ICP1_2004_A)
Explore F1D5V8 
Go to UniProtKB:  F1D5V8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1D5V8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Csy2B [auth C],
T [auth c]		248Vibrio phage ICP1_2004_AMutation(s): 0 
Gene Names: TUST1-10_00445
UniProt
Find proteins for F1D5V7 (Vibrio phage ICP1_2004_A)
Explore F1D5V7 
Go to UniProtKB:  F1D5V7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1D5V7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cas1C [auth D],
D [auth E],
U [auth d],
V [auth e]		302Vibrio phage ICP1_2004_AMutation(s): 0 
Gene Names: TUST1-10_00460
UniProt
Find proteins for F1D5W0 (Vibrio phage ICP1_2004_A)
Explore F1D5W0 
Go to UniProtKB:  F1D5W0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1D5W0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Csy3306Vibrio phage ICP1_2004_AMutation(s): 0 
Gene Names: TUST1-10_00440
UniProt
Find proteins for F1D5V6 (Vibrio phage ICP1_2004_A)
Explore F1D5V6 
Go to UniProtKB:  F1D5V6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1D5V6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Csy4F [auth H],
X [auth h]		168Vibrio phage ICP1_2004_AMutation(s): 0 
Gene Names: TUST1-10_00435
UniProt
Find proteins for F1D5V5 (Vibrio phage ICP1_2004_A)
Explore F1D5V5 
Go to UniProtKB:  F1D5V5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1D5V5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
HD Cas3-type domain-containing proteinO [auth A],
R [auth a]		930Vibrio phage ICP1_2004_AMutation(s): 0 
Gene Names: TUST1-10_00455
UniProt
Find proteins for F1D5V9 (Vibrio phage ICP1_2004_A)
Explore F1D5V9 
Go to UniProtKB:  F1D5V9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1D5V9
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains LengthOrganismImage
RNA (60-MER)DA [auth p],
L [auth P]		60Vibrio phage ICP1_2004_A
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains LengthOrganismImage
DNA (43-MER)EA [auth q],
M [auth Q],
P [auth U]		43Vibrio phage ICP1_2004_A
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains LengthOrganismImage
DNA (31-MER)FA [auth r],
N [auth R]		31Vibrio phage ICP1_2004_A
Sequence Annotations
Expand
  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 10
MoleculeChains LengthOrganismImage
DNA (5'-D(*AP*TP*CP*TP*TP*CP*CP*CP*TP*AP*TP*TP*TP*AP*AP*AP*TP*TP*GP*CP*T)-3')Q [auth V]21Vibrio phage ICP1_2004_A
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China32171274

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-17
    Type: Initial release