8K1O

mycobacterial efflux pump, AMPPNP bound state

PDB DOI: https://doi.org/10.2210/pdb8K1O/pdb
EM Map EMD-36797: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Mycolicibacterium smegmatis MC2 155
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2023-07-11 Released: 2024-07-17
Deposition Author(s): Wang, Y., Wu, F., Zhang, L., Rao, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

mycobacterial efflux pump, AMPPNP bound state

Wang, Y., Wu, F., Zhang, L., Rao, Z.

To be published.

Macromolecule Content

Total Structure Weight: 127.67 kDa
Atom Count: 7,163
Modelled Residue Count: 937
Deposited Residue Count: 1,170
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Multidrug efflux system permease protein Rv1217c	A	548	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: Rv1217c Membrane Entity: Yes
UniProt
Find proteins for O05318 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore O05318 Go to UniProtKB: O05318
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O05318
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Multidrug efflux system ATP-binding protein Rv1218c	B, C	311	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: Rv1218c EC: 7.6.2 Membrane Entity: Yes
UniProt
Find proteins for O86311 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore O86311 Go to UniProtKB: O86311
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O86311
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CDL (Subject of Investigation/LOI) Query on CDL Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] mmCIF format, chain D [auth A] mmCIF format, chain E [auth A]	D [auth A], E [auth A]	CARDIOLIPIN C₈₁ H₁₅₆ O₁₇ P₂ XVTUQDWPJJBEHJ-KZCWQMDCSA-L		Interactions Focus chain D [auth A] Focus chain E [auth A] Interactions & Density Focus chain D [auth A] Focus chain E [auth A]
ANP (Subject of Investigation/LOI) Query on ANP Download Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain H [auth C] MOL2 format, chain F [auth B] MOL2 format, chain H [auth C] mmCIF format, chain F [auth B] mmCIF format, chain H [auth C]	F [auth B], H [auth C]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C₁₀ H₁₇ N₆ O₁₂ P₃ PVKSNHVPLWYQGJ-KQYNXXCUSA-N		Interactions Focus chain F [auth B] Focus chain H [auth C] Interactions & Density Focus chain F [auth B] Focus chain H [auth C]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain I [auth C] MOL2 format, chain G [auth B] MOL2 format, chain I [auth C] mmCIF format, chain G [auth B] mmCIF format, chain I [auth C]	G [auth B], I [auth C]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain G [auth B] Focus chain I [auth C] Interactions & Density Focus chain G [auth B] Focus chain I [auth C]