8JZS

Outward-facing SLC15A4 dimer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling.

Chen, X.Xie, M.Zhang, S.Monguio-Tortajada, M.Yin, J.Liu, C.Zhang, Y.Delacretaz, M.Song, M.Wang, Y.Dong, L.Ding, Q.Zhou, B.Tian, X.Deng, H.Xu, L.Liu, X.Yang, Z.Chang, Q.Na, J.Zeng, W.Superti-Furga, G.Rebsamen, M.Yang, M.

(2023) Nat Commun 14: 6627-6627

  • DOI: https://doi.org/10.1038/s41467-023-42210-9
  • Primary Citation of Related Structures:  
    8JZR, 8JZS, 8JZU

  • PubMed Abstract: 

    Toll-like receptors (TLRs) are a class of proteins that play critical roles in recognizing pathogens and initiating innate immune responses. TASL, a recently identified innate immune adaptor protein for endolysosomal TLR7/8/9 signaling, is recruited by the lysosomal proton-coupled amino-acid transporter SLC15A4, and then activates IRF5, which in turn triggers the transcription of type I interferons and cytokines. Here, we report three cryo-electron microscopy (cryo-EM) structures of human SLC15A4 in the apo monomeric and dimeric state and as a TASL-bound complex. The apo forms are in an outward-facing conformation, with the dimeric form showing an extensive interface involving four cholesterol molecules. The structure of the TASL-bound complex reveals an unprecedented interaction mode with solute carriers. During the recruitment of TASL, SLC15A4 undergoes a conformational change from an outward-facing, lysosomal lumen-exposed state to an inward-facing state to form a binding pocket, allowing the N-terminal helix of TASL to be inserted into. Our findings provide insights into the molecular basis of regulatory switch involving a human solute carrier and offers an important framework for structure-guided drug discovery targeting SLC15A4-TASL-related human autoimmune diseases.


  • Organizational Affiliation

    Ministry of Education Key Laboratory of Protein Science, Tsinghua-Peking Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, 100084, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
lysosomal transporterA [auth B],
B [auth A]
619Homo sapiensMutation(s): 0 
Gene Names: SLC15A4
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N697 (Homo sapiens)
Explore Q8N697 
Go to UniProtKB:  Q8N697
PHAROS:  Q8N697
GTEx:  ENSG00000139370 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N697
Glycosylation
Glycosylation Sites: 1Go to GlyGen: Q8N697-1
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China21532004, 31570733

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-27
    Type: Initial release
  • Version 1.1: 2023-11-01
    Changes: Database references
  • Version 2.0: 2023-12-13
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary
  • Version 2.1: 2024-11-13
    Changes: Data collection, Structure summary