8JW4

Cryo-EM structure of Plasmodium falciparum multidrug resistance protein 1 in the apo state without H1 helix


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The structure of Plasmodium falciparum multidrug resistance protein 1 reveals an N-terminal regulatory domain.

Si, K.He, X.Chen, L.Zhang, A.Guo, C.Li, M.

(2023) Proc Natl Acad Sci U S A 120: e2219905120-e2219905120

  • DOI: https://doi.org/10.1073/pnas.2219905120
  • Primary Citation of Related Structures:  
    8JVH, 8JW4, 8JWF, 8JWG, 8JWI

  • PubMed Abstract: 

    Plasmodium falciparum multidrug resistance protein 1 (PfMDR1), an adenosine triphosphate (ATP)-binding cassette (ABC) transporter on the digestive vacuole (DV) membrane of the parasite, is associated with the resistance to antimalarial drugs. To understand the mechanisms of PfMDR1, we determined the cryo-electron microscopy structures of this transporter in different states. The transporter in the apo state shows an inward-facing conformation with a large cavity opening to the cytoplasm. Upon ATP binding and dimerization of the nucleotide-binding domains (NBDs), PfMDR1 displays an outward-facing conformation with a cavity toward the DV lumen. Drug resistance-associated mutations were investigated in both structures for their effects, and Y184F was identified as an allosteric activity-enhancing mutation. The amphiphilic substrate-binding site of PfMDR1 was revealed by the complex structure with the antimalarial drug mefloquine and confirmed by mutagenesis studies. Remarkably, a helical structure was found to hinder NBD dimerization and inhibit PfMDR1 activity. The location of this regulatory domain in the N terminus is different from the well-studied R domain in the internal linker region of other ABC transporter family members. The lack of the phosphorylation site of this domain also suggests a different regulation mechanism.


  • Organizational Affiliation

    Harbin Institute of Technology Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150080, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Multidrug resistance protein 11,424Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: PF3D7_0523000
EC: 3.6.3.44
Membrane Entity: Yes 
UniProt
Find proteins for Q7K6A5 (Plasmodium falciparum (isolate 3D7))
Explore Q7K6A5 
Go to UniProtKB:  Q7K6A5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7K6A5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2023-08-30 
  • Deposition Author(s): Li, M., Si, K.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32171209

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-30
    Type: Initial release