Crystal structure of Chitoporin from Vibrio harveyi in complex with gentamicin c1a
Sanram, S., Suginta, W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chitoporin | 350 | Vibrio harveyi | Mutation(s): 0  Gene Names: chiP, AL538_13355, VCHENC02_0932 Membrane Entity: Yes  | ![]() | |
UniProt | |||||
Find proteins for L0RVU0 (Vibrio harveyi) Explore L0RVU0  Go to UniProtKB:  L0RVU0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | L0RVU0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
LLL Query on LLL | Q [auth C] | (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR
OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL C19 H39 N5 O7 VEGXETMJINRLTH-BOZYPMBZSA-N | |||
C8E (Subject of Investigation/LOI) Query on C8E | CA [auth G] GA [auth H] J [auth A] K [auth A] O [auth B] | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE C16 H34 O5 FEOZZFHAVXYAMB-UHFFFAOYSA-N | |||
NA Query on NA | AA [auth G] BA [auth G] DA [auth H] EA [auth H] FA [auth H] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 99.327 | α = 90 |
b = 102.919 | β = 95.29 |
c = 172.58 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data scaling |
HKL-2000 | data reduction |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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Vidyasirimedhi Institute of Science and Technology (VISTEC) | Thailand | -- |