8JU3

Mu phage tail fiber


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.198 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Determination of the three-dimensional structure of bacteriophage Mu(-) tail fiber and its characterization.

Mori, Y.Yamashita, E.Nakagawa, A.Matsuzawa, T.Inagaki, M.Aiba, Y.Tanaka, S.Hatori, S.Ayami, M.Takeda, S.

(2024) Virology 593: 110017-110017

  • DOI: https://doi.org/10.1016/j.virol.2024.110017
  • Primary Citation of Related Structures:  
    8JU3

  • PubMed Abstract: 

    Bacteriophage Mu is a temperate phage known to infect various species of Enterobacteria, playing a role in bacterial mutation induction and horizontal gene transfer. The phage possesses two types of tail fibers important for host recognition, which enable it to expand its range of hosts. The alternate tail fibers are formed through the action of genes 49-50 or 52-51, allowing the Mu phage to recognize different surfaces of host cells. In a previous study, we presented the X-ray crystal structure of the C-terminal lipopolysaccharide (LPS)-binding domain of gene product (gp) 49, one of the subunits comprising the Mu tail fiber. In this study, we have determined the structure of the alternative tail fiber subunit, gp52, and compared it with other tail fibers. The results revealed that Mu phage employs different structural motifs for two individual tail fibers for recognizing different hosts.


  • Organizational Affiliation

    Faculty of Science and Technology, Division of Molecular Science, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma, 376-8515, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tail fiber protein S,Tail fiber protein S'488Escherichia phage MuMutation(s): 0 
Gene Names: SMup49S'Mup52
UniProt
Find proteins for P0DJY6 (Escherichia phage Mu)
Explore P0DJY6 
Go to UniProtKB:  P0DJY6
Find proteins for Q9T1V0 (Escherichia phage Mu)
Explore Q9T1V0 
Go to UniProtKB:  Q9T1V0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP0DJY6Q9T1V0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.198 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 63.839α = 90
b = 63.839β = 90
c = 462.383γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release
  • Version 1.1: 2024-09-11
    Changes: Database references