8JT7

Structure of arginine oxidase from Pseudomonas sp. TRU 7192

• PDB DOI: https://doi.org/10.2210/pdb8JT7/pdb
• EM Map EMD-36635: EMDB EMDataResource

• Classification: OXIDOREDUCTASE
• Organism(s): Pseudomonas sp.
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-06-21 Released: 2024-06-26 
• Deposition Author(s): Yamaguchi, H., Numoto, N., Suzuki, H., Nishikawa, K., Kamegawa, A., Takahashi, K., Sugiki, M., Fujiyoshi, Y.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.34 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico

Literature

Structural basis of arginine oxidase from Pseudomonas sp. TRU 7192

Yamaguchi, H., Numoto, N., Suzuki, H., Nishikawa, K., Kamegawa, A., Takahashi, K., Matsui, D., Asano, Y., Sugiki, M., Fujiyoshi, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D4  (Explore in 3D)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 68.18 kDa 
• Atom Count: 4,690 
• Modelled Residue Count: 579 
• Deposited Residue Count: 596 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amine oxidoreductase	A	596	Pseudomonas sp.	Mutation(s): 0
UniProt
Find proteins for A0A177SH44 (Pseudomonas putida) Explore A0A177SH44  Go to UniProtKB:  A0A177SH44

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD (Subject of Investigation/LOI)	B [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.34 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION
MODEL REFINEMENT	REFMAC
MODEL REFINEMENT	Servalcat	0.4.17

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-26 
Deposition Author(s): Yamaguchi, H., Numoto, N., Suzuki, H., Nishikawa, K., Kamegawa, A., Takahashi, K., Sugiki, M., Fujiyoshi, Y.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-06-26
  Type: Initial release