8JP3

FCP trimer in diatom Thalassiosira pseudonana

PDB DOI: https://doi.org/10.2210/pdb8JP3/pdb
EM Map EMD-36466: EMDB EMDataResource

Classification: PHOTOSYNTHESIS
Organism(s): Thalassiosira pseudonana CCMP1335
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2023-06-10 Released: 2024-06-12
Deposition Author(s): Feng, Y., Li, Z., Zhou, C.C., Liu, C., Shen, J.R., Wang, W.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.73 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

FCP trimer in diatom Thalassiosira pseudonana

Feng, Y., Li, Z., Zhou, C.C., Wang, W., Shen, J.R.

To be published.

Macromolecule Content

Total Structure Weight: 102.09 kDa
Atom Count: 7,104
Modelled Residue Count: 540
Deposited Residue Count: 540
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fucoxanthin chlorophyll a/c protein 8	A, B, C	180	Thalassiosira pseudonana CCMP1335	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for B8BS67 (Thalassiosira pseudonana) Explore B8BS67 Go to UniProtKB: B8BS67
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B8BS67
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CLA (Subject of Investigation/LOI) Query on CLA Download Ideal Coordinates CCD File SDF format, chain BB [auth C] SDF format, chain CB [auth C] SDF format, chain DA [auth B] SDF format, chain EA [auth B] SDF format, chain EB [auth C] SDF format, chain FB [auth C] SDF format, chain GA [auth B] SDF format, chain GB [auth C] SDF format, chain IA [auth B] SDF format, chain JA [auth B] SDF format, chain K [auth A] SDF format, chain L [auth A] SDF format, chain LA [auth B] SDF format, chain MA [auth B] SDF format, chain N [auth A] SDF format, chain OA [auth C] SDF format, chain P [auth A] SDF format, chain Q [auth A] SDF format, chain S [auth A] SDF format, chain T [auth A] SDF format, chain U [auth A] SDF format, chain WA [auth C] SDF format, chain XA [auth C] SDF format, chain ZA [auth C] MOL2 format, chain BB [auth C] MOL2 format, chain CB [auth C] MOL2 format, chain DA [auth B] MOL2 format, chain EA [auth B] MOL2 format, chain EB [auth C] MOL2 format, chain FB [auth C] MOL2 format, chain GA [auth B] MOL2 format, chain GB [auth C] MOL2 format, chain IA [auth B] MOL2 format, chain JA [auth B] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A] MOL2 format, chain LA [auth B] MOL2 format, chain MA [auth B] MOL2 format, chain N [auth A] MOL2 format, chain OA [auth C] MOL2 format, chain P [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain S [auth A] MOL2 format, chain T [auth A] MOL2 format, chain U [auth A] MOL2 format, chain WA [auth C] MOL2 format, chain XA [auth C] MOL2 format, chain ZA [auth C]	BB [auth C] CB [auth C] DA [auth B] EA [auth B] EB [auth C] BB [auth C], CB [auth C], DA [auth B], EA [auth B], EB [auth C], FB [auth C], GA [auth B], GB [auth C], IA [auth B], JA [auth B], K [auth A], L [auth A], LA [auth B], MA [auth B], N [auth A], OA [auth C], P [auth A], Q [auth A], S [auth A], T [auth A], U [auth A], WA [auth C], XA [auth C], ZA [auth C]	CHLOROPHYLL A C₅₅ H₇₂ Mg N₄ O₅ ATNHDLDRLWWWCB-AENOIHSZSA-M		Interactions Focus chain BB [auth C] Focus chain CB [auth C] Focus chain DA [auth B] Focus chain EA [auth B] Focus chain EB [auth C] Focus chain FB [auth C] Focus chain GA [auth B] Focus chain GB [auth C] Focus chain IA [auth B] Focus chain JA [auth B] Focus chain K [auth A] Focus chain L [auth A] Focus chain LA [auth B] Focus chain MA [auth B] Focus chain N [auth A] Focus chain OA [auth C] Focus chain P [auth A] Focus chain Q [auth A] Focus chain S [auth A] Focus chain T [auth A] Focus chain U [auth A] Focus chain WA [auth C] Focus chain XA [auth C] Focus chain ZA [auth C] Interactions & Density Focus chain BB [auth C] Focus chain CB [auth C] Focus chain DA [auth B] Focus chain EA [auth B] Focus chain EB [auth C] Focus chain FB [auth C] Focus chain GA [auth B] Focus chain GB [auth C] Focus chain IA [auth B] Focus chain JA [auth B] Focus chain K [auth A] Focus chain L [auth A] Focus chain LA [auth B] Focus chain MA [auth B] Focus chain N [auth A] Focus chain OA [auth C] Focus chain P [auth A] Focus chain Q [auth A] Focus chain S [auth A] Focus chain T [auth A] Focus chain U [auth A] Focus chain WA [auth C] Focus chain XA [auth C] Focus chain ZA [auth C]
LMG (Subject of Investigation/LOI) Query on LMG Download Ideal Coordinates CCD File SDF format, chain HB [auth C] SDF format, chain NA [auth B] SDF format, chain V [auth A] MOL2 format, chain HB [auth C] MOL2 format, chain NA [auth B] MOL2 format, chain V [auth A]	HB [auth C], NA [auth B], V [auth A]	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C₄₅ H₈₆ O₁₀ DCLTVZLYPPIIID-CVELTQQQSA-N		Interactions Focus chain HB [auth C] Focus chain NA [auth B] Focus chain V [auth A] Interactions & Density Focus chain HB [auth C] Focus chain NA [auth B] Focus chain V [auth A]
A86 (Subject of Investigation/LOI) Query on A86 Download Ideal Coordinates CCD File SDF format, chain AA [auth B] SDF format, chain BA [auth B] SDF format, chain CA [auth B] SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain PA [auth C] SDF format, chain QA [auth C] SDF format, chain RA [auth C] SDF format, chain SA [auth C] SDF format, chain TA [auth C] SDF format, chain UA [auth C] SDF format, chain VA [auth C] SDF format, chain W [auth B] SDF format, chain X [auth B] SDF format, chain Y [auth B] SDF format, chain Z [auth B] MOL2 format, chain AA [auth B] MOL2 format, chain BA [auth B] MOL2 format, chain CA [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain PA [auth C] MOL2 format, chain QA [auth C] MOL2 format, chain RA [auth C] MOL2 format, chain SA [auth C] MOL2 format, chain TA [auth C] MOL2 format, chain UA [auth C] MOL2 format, chain VA [auth C] MOL2 format, chain W [auth B] MOL2 format, chain X [auth B] MOL2 format, chain Y [auth B] MOL2 format, chain Z [auth B]	AA [auth B] BA [auth B] CA [auth B] D [auth A] E [auth A] AA [auth B], BA [auth B], CA [auth B], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth A], PA [auth C], QA [auth C], RA [auth C], SA [auth C], TA [auth C], UA [auth C], VA [auth C], W [auth B], X [auth B], Y [auth B], Z [auth B]	(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate C₄₂ H₅₈ O₆ SJWWTRQNNRNTPU-XJUZQKKNSA-N		Interactions Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain PA [auth C] Focus chain QA [auth C] Focus chain RA [auth C] Focus chain SA [auth C] Focus chain TA [auth C] Focus chain UA [auth C] Focus chain VA [auth C] Focus chain W [auth B] Focus chain X [auth B] Focus chain Y [auth B] Focus chain Z [auth B] Interactions & Density Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain PA [auth C] Focus chain QA [auth C] Focus chain RA [auth C] Focus chain SA [auth C] Focus chain TA [auth C] Focus chain UA [auth C] Focus chain VA [auth C] Focus chain W [auth B] Focus chain X [auth B] Focus chain Y [auth B] Focus chain Z [auth B]
KC1 (Subject of Investigation/LOI) Query on KC1 Download Ideal Coordinates CCD File SDF format, chain DB [auth C] SDF format, chain KA [auth B] SDF format, chain R [auth A] MOL2 format, chain DB [auth C] MOL2 format, chain KA [auth B] MOL2 format, chain R [auth A]	DB [auth C], KA [auth B], R [auth A]	Chlorophyll c1 C₃₅ H₃₀ Mg N₄ O₅ DGNIJJSSARBJSH-QIEHNWLWSA-L		Interactions Focus chain DB [auth C] Focus chain KA [auth B] Focus chain R [auth A] Interactions & Density Focus chain DB [auth C] Focus chain KA [auth B] Focus chain R [auth A]
KC2 (Subject of Investigation/LOI) Query on KC2 Download Ideal Coordinates CCD File SDF format, chain AB [auth C] SDF format, chain FA [auth B] SDF format, chain HA [auth B] SDF format, chain M [auth A] SDF format, chain O [auth A] SDF format, chain YA [auth C] MOL2 format, chain AB [auth C] MOL2 format, chain FA [auth B] MOL2 format, chain HA [auth B] MOL2 format, chain M [auth A] MOL2 format, chain O [auth A] MOL2 format, chain YA [auth C]	AB [auth C] FA [auth B] HA [auth B] M [auth A] O [auth A] AB [auth C], FA [auth B], HA [auth B], M [auth A], O [auth A], YA [auth C]	Chlorophyll c2 C₃₅ H₂₈ Mg N₄ O₅ QDRBYWCRXZZVLY-QIEHNWLWSA-L		Interactions Focus chain AB [auth C] Focus chain FA [auth B] Focus chain HA [auth B] Focus chain M [auth A] Focus chain O [auth A] Focus chain YA [auth C] Interactions & Density Focus chain AB [auth C] Focus chain FA [auth B] Focus chain HA [auth B] Focus chain M [auth A] Focus chain O [auth A] Focus chain YA [auth C]