8JMY | pdb_00008jmy

Crystal structure of Rv2186c in Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb8JMY/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Mycobacterium tuberculosis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-06-05 Released: 2024-06-12
Deposition Author(s): Yan, L., Zhang, R.
Funding Organization(s): Ministry of Science and Technology (MoST, China), Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.56 Å
R-Value Free:
0.204 (Depositor), 0.204 (DCC)
R-Value Work:
0.158 (Depositor), 0.158 (DCC)

Starting Model: in silico
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Rv2186c in Mycobacterium tuberculosis

Yan, L., Zhang, R.

To be published.

Macromolecule Content

Total Structure Weight: 29.19 kDa
Atom Count: 2,184
Modeled Residue Count: 245
Deposited Residue Count: 258
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyketide cyclase / dehydrase and lipid transport	A [auth B], B [auth A]	129	Mycobacterium tuberculosis	Mutation(s): 0 Gene Names: Rv2186c
UniProt
Find proteins for O53520 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore O53520 Go to UniProtKB: O53520
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O53520
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.56 Å
R-Value Free: 0.204 (Depositor), 0.204 (DCC)
R-Value Work: 0.158 (Depositor), 0.158 (DCC)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.477	α = 90
b = 28.254	β = 100.771
c = 86.779	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-06-12

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2017YFA0505900
Other government	China	2020YJ0209

Revision History (Full details and data files)

Version 1.0: 2024-06-12
Type: Initial release
Version 1.1: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.