Cryo-EM structures of human sodium-dependent vitamin C transporter 1
Kobayashi, T.A., Kusakizako, T., Nureki, O.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Solute carrier family 23 member 1 | 598 | Homo sapiens | Mutation(s): 0  Gene Names: SLC23A1, SVCT1, YSPL3 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UHI7 (Homo sapiens) Explore Q9UHI7  Go to UniProtKB:  Q9UHI7 | |||||
PHAROS:  Q9UHI7 GTEx:  ENSG00000170482  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UHI7 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | Go to GlyGen: Q9UHI7-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AV0 (Subject of Investigation/LOI) Query on AV0 | C [auth A], E [auth A] | Lauryl Maltose Neopentyl Glycol C47 H88 O22 MADJBYLAYPCCOO-VWHTXWAPSA-N | |||
LBN (Subject of Investigation/LOI) Query on LBN | D [auth A] | 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine C42 H82 N O8 P WTJKGGKOPKCXLL-VYOBOKEXSA-N | |||
CLR (Subject of Investigation/LOI) Query on CLR | F [auth A], G [auth A] | CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N | |||
PLM (Subject of Investigation/LOI) Query on PLM | H [auth A] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | RELION | 3.1.1 |
MODEL REFINEMENT | Servalcat | 0.2.115 |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | -- |