8JDI

Crystal structure of Cas7-AcrIF25 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.37 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.219 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

An anti-CRISPR that pulls apart a CRISPR-Cas complex.

Trost, C.N.Yang, J.Garcia, B.Hidalgo-Reyes, Y.Fung, B.C.M.Wang, J.Lu, W.T.Maxwell, K.L.Wang, Y.Davidson, A.R.

(2024) Nature 632: 375-382

  • DOI: https://doi.org/10.1038/s41586-024-07642-3
  • Primary Citation of Related Structures:  
    8JDH, 8JDI

  • PubMed Abstract: 

    In biological systems, the activities of macromolecular complexes must sometimes be turned off. Thus, a wide variety of protein inhibitors has evolved for this purpose. These inhibitors function through diverse mechanisms, including steric blocking of crucial interactions, enzymatic modification of key residues or substrates, and perturbation of post-translational modifications 1 . Anti-CRISPRs-proteins that block the activity of CRISPR-Cas systems-are one of the largest groups of inhibitors described, with more than 90 families that function through diverse mechanisms 2-4 . Here, we characterize the anti-CRISPR AcrIF25, and we show that it inhibits the type I-F CRISPR-Cas system by pulling apart the fully assembled effector complex. AcrIF25 binds to the predominant CRISPR RNA-binding components of this complex, comprising six Cas7 subunits, and strips them from the RNA. Structural and biochemical studies indicate that AcrIF25 removes one Cas7 subunit at a time, starting at one end of the complex. Notably, this feat is achieved with no apparent enzymatic activity. To our knowledge, AcrIF25 is the first example of a protein that disassembles a large and stable macromolecular complex in the absence of an external energy source. As such, AcrIF25 establishes a paradigm for macromolecular complex inhibitors that may be used for biotechnological applications.


  • Organizational Affiliation

    Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated protein Csy3A,
C,
E [auth B],
G [auth D]
342Pseudomonas aeruginosa UCBPP-PA14Mutation(s): 0 
Gene Names: csy3
UniProt
Find proteins for Q02MM1 (Pseudomonas aeruginosa (strain UCBPP-PA14))
Explore Q02MM1 
Go to UniProtKB:  Q02MM1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02MM1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
AcrIF25B [auth E],
D [auth G],
F,
H
166Alcanivorax sp. KX64203Mutation(s): 0 
Gene Names: A3Q32_18550
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.37 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.219 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 108.666α = 90
b = 119.008β = 90
c = 215.991γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China91940302
National Natural Science Foundation of China (NSFC)China31725008

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-29
    Type: Initial release
  • Version 1.1: 2024-07-24
    Changes: Database references
  • Version 1.2: 2024-08-21
    Changes: Database references
  • Version 1.3: 2024-09-04
    Changes: Database references
  • Version 1.4: 2024-09-11
    Changes: Database references