8J9B

LnaB-actin binary complex

• PDB DOI: https://doi.org/10.2210/pdb8J9B/pdb

• Classification: TRANSFERASE
• Organism(s): Oryctolagus cuniculus, Legionella pneumophila
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-05-03 Released: 2024-05-08 
• Deposition Author(s): Chen, T.T., Ouyang, S.Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.42 Å
• R-Value Free: 0.298 
• R-Value Work: 0.287 

Starting Model: in silico

Literature

Structure of Legionella effector LnaB-actin binary complex

Chen, T.T., Ouyang, S.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 20-mer - A12B8 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 455.52 kDa 
• Atom Count: 26,804 
• Modelled Residue Count: 3,374 
• Deposited Residue Count: 4,014 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Actin gamma 1	A, B, C, D, E, F	375	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for A0A8C6VAB1 (Naja naja) Explore A0A8C6VAB1  Go to UniProtKB:  A0A8C6VAB1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Type IV secretion protein Dot	G [auth H], H [auth I], I [auth J], J [auth K]	441	Legionella pneumophila	Mutation(s): 0  Gene Names: C3927_12730
UniProt
Find proteins for A0AA44XJB8 (Legionella pneumophila) Explore A0AA44XJB8  Go to UniProtKB:  A0AA44XJB8

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.42 Å
• R-Value Free: 0.298 
• R-Value Work: 0.287 
• Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.577	α = 90
b = 110.577	β = 90
c = 407.927	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-08 
Deposition Author(s): Chen, T.T., Ouyang, S.Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-05-08
  Type: Initial release