8J8E

Human serum albumin-palladium(II) agent complex

PDB DOI: https://doi.org/10.2210/pdb8J8E/pdb

Classification: HORMONE
Organism(s): Homo sapiens
Expression System: Saccharomyces cerevisiae
Mutation(s): No

Deposited: 2023-05-01 Released: 2024-05-01
Deposition Author(s): Zhang, Z.L., Zhang, J.Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.316
R-Value Work: 0.250
R-Value Observed: 0.253

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Structure of human serum albumin palladium(II) agent complex

Zhang, Z.L., Zhang, J.Z.

To be published.

Macromolecule Content

Total Structure Weight: 137 kDa
Atom Count: 9,306
Modelled Residue Count: 1,162
Deposited Residue Count: 1,170
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serum albumin	A, B [auth I]	585	Homo sapiens	Mutation(s): 0 Gene Names: ALB, GIG20, GIG42, PRO0903, PRO1708, PRO2044, PRO2619, PRO2675, UNQ696/PRO1341
UniProt & NIH Common Fund Data Resources
Find proteins for P02768 (Homo sapiens) Explore P02768 Go to UniProtKB: P02768
PHAROS: P02768 GTEx: ENSG00000163631
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P02768
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
U5U (Subject of Investigation/LOI) Query on U5U Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain P [auth I] MOL2 format, chain I [auth A] MOL2 format, chain P [auth I] mmCIF format, chain I [auth A] mmCIF format, chain P [auth I]	I [auth A], P [auth I]	~{N},~{N}-dimethyl-7-phenyl-3-thia-1$l^{4},5,6$l^{4}-triaza-2$l^{3}-palladatricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine C₁₅ H₁₅ N₄ Pd S KOLIMVKKIDYABX-KLSJZZFUSA-M		Interactions Focus chain I [auth A] Focus chain P [auth I] Interactions & Density Focus chain I [auth A] Focus chain P [auth I]
PLM (Subject of Investigation/LOI) Query on PLM Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain J [auth I] SDF format, chain K [auth I] SDF format, chain L [auth I] SDF format, chain M [auth I] SDF format, chain N [auth I] SDF format, chain O [auth I] SDF format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain J [auth I] MOL2 format, chain K [auth I] MOL2 format, chain L [auth I] MOL2 format, chain M [auth I] MOL2 format, chain N [auth I] MOL2 format, chain O [auth I] MOL2 format, chain C [auth A] mmCIF format, chain D [auth A] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain J [auth I] mmCIF format, chain K [auth I] mmCIF format, chain L [auth I] mmCIF format, chain M [auth I] mmCIF format, chain N [auth I] mmCIF format, chain O [auth I] mmCIF format, chain C [auth A]	C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], J [auth I], K [auth I], L [auth I], M [auth I], N [auth I], O [auth I]	PALMITIC ACID C₁₆ H₃₂ O₂ IPCSVZSSVZVIGE-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth I] Focus chain K [auth I] Focus chain L [auth I] Focus chain M [auth I] Focus chain N [auth I] Focus chain O [auth I] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain J [auth I] Focus chain K [auth I] Focus chain L [auth I] Focus chain M [auth I] Focus chain N [auth I] Focus chain O [auth I]