8J7M

ion channel

PDB DOI: https://doi.org/10.2210/pdb8J7M/pdb
EM Map EMD-36042: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens, Aequorea victoria
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2023-04-27 Released: 2024-05-15
Deposition Author(s): Chen, H.W., Chen, H.W.
Funding Organization(s): Brazilian National Council for Scientific and Technological Development (CNPq)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

ion channel

Chen, H.W., Chen, H.W.

To be published.

Macromolecule Content

Total Structure Weight: 367.96 kDa
Atom Count: 8,806
Modelled Residue Count: 1,028
Deposited Residue Count: 3,212
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ion channel,Voltage dependent ion channel,Green fluorescent protein (Fragment),Voltage dependent ion channel,Green fluorescent protein (Fragment),Voltage dependent ion channel,Green fluorescent protein (Fragment)	A, B [auth D], C [auth B], D [auth C]	803	Homo sapiens, Aequorea victoria	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for R1EKX3 (Emiliania huxleyi) Explore R1EKX3 Go to UniProtKB: R1EKX3
Find proteins for R1FVI4 (Emiliania huxleyi) Explore R1FVI4 Go to UniProtKB: R1FVI4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	R1EKX3R1FVI4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
POV Query on POV Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth D] SDF format, chain L [auth B] SDF format, chain O [auth C] MOL2 format, chain E [auth A] MOL2 format, chain H [auth D] MOL2 format, chain L [auth B] MOL2 format, chain O [auth C]	E [auth A], H [auth D], L [auth B], O [auth C]	(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate C₄₂ H₈₂ N O₈ P WTJKGGKOPKCXLL-PFDVCBLKSA-N		Interactions Focus chain E [auth A] Focus chain H [auth D] Focus chain L [auth B] Focus chain O [auth C] Interactions & Density Focus chain E [auth A] Focus chain H [auth D] Focus chain L [auth B] Focus chain O [auth C]
CLR Query on CLR Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain I [auth D] SDF format, chain J [auth D] SDF format, chain K [auth D] SDF format, chain M [auth B] SDF format, chain N [auth B] SDF format, chain P [auth C] SDF format, chain Q [auth C] SDF format, chain R [auth C] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain I [auth D] MOL2 format, chain J [auth D] MOL2 format, chain K [auth D] MOL2 format, chain M [auth B] MOL2 format, chain N [auth B] MOL2 format, chain P [auth C] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C]	F [auth A] G [auth A] I [auth D] J [auth D] K [auth D] F [auth A], G [auth A], I [auth D], J [auth D], K [auth D], M [auth B], N [auth B], P [auth C], Q [auth C], R [auth C]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain I [auth D] Focus chain J [auth D] Focus chain K [auth D] Focus chain M [auth B] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain R [auth C] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain I [auth D] Focus chain J [auth D] Focus chain K [auth D] Focus chain M [auth B] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain R [auth C]