8J75

Human high-affinity choline transporter CHT1 in the HC-3-bound outward-facing open conformation, monomeric state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Transport mechanism of presynaptic high-affinity choline uptake by CHT1.

Qiu, Y.Gao, Y.Huang, B.Bai, Q.Zhao, Y.

(2024) Nat Struct Mol Biol 31: 701-709

  • DOI: https://doi.org/10.1038/s41594-024-01259-w
  • Primary Citation of Related Structures:  
    8J74, 8J75, 8J76, 8J77

  • PubMed Abstract: 

    Choline is a vital nutrient and a precursor for the biosynthesis of essential metabolites, including acetylcholine (ACh), that play a central role in fetal development, especially in the brain. In cholinergic neurons, the high-affinity choline transporter (CHT1) provides an extraordinarily efficient reuptake mechanism to reutilize choline derived from intrasynaptical ACh hydrolysis and maintain ACh synthesis in the presynapse. Here, we determined structures of human CHT1 in three discrete states: the outward-facing state bound with the competitive inhibitor hemicholinium-3 (HC-3); the inward-facing occluded state bound with the substrate choline; and the inward-facing apo open state. Our structures and functional characterizations elucidate how the inhibitor and substrate are recognized. Moreover, our findings shed light on conformational changes when transitioning from an outward-facing to an inward-facing state and establish a framework for understanding the transport cycle, which relies on the stabilization of the outward-facing state by a short intracellular helix, IH1.


  • Organizational Affiliation

    Key Laboratory of Biomacromolecules (CAS), National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
High affinity choline transporter 1580Homo sapiensMutation(s): 0 
Gene Names: SLC5A7CHT1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9GZV3 (Homo sapiens)
Explore Q9GZV3 
Go to UniProtKB:  Q9GZV3
PHAROS:  Q9GZV3
GTEx:  ENSG00000115665 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9GZV3
Glycosylation
Glycosylation Sites: 1Go to GlyGen: Q9GZV3-1
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
B
3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G15407YE
GlyCosmos:  G15407YE
GlyGen:  G15407YE
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HC6 (Subject of Investigation/LOI)
Query on HC6

Download Ideal Coordinates CCD File 
C [auth A](2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)
C24 H34 N2 O4
JIWUESGGKYLPPG-DNQXCXABSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
HC6 BindingDB:  8J75 Ki: 10 (nM) from 1 assay(s)
IC50: 12 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTCoot0.9.6.2-pre
RECONSTRUCTIONcryoSPARC3.3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB37030304

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release
  • Version 1.1: 2024-04-17
    Changes: Database references
  • Version 1.2: 2024-04-24
    Changes: Database references
  • Version 1.3: 2024-05-01
    Changes: Database references
  • Version 1.4: 2024-10-16
    Changes: Data collection, Structure summary