8J07

96nm repeat of human respiratory doublet microtubule and associated axonemal complexes

  • Classification: STRUCTURAL PROTEIN
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-04-09 Released: 2023-07-26 
  • Deposition Author(s): Gui, M., Brown, A.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history


Literature

Axonemal structures reveal mechanoregulatory and disease mechanisms.

Walton, T.Gui, M.Velkova, S.Fassad, M.R.Hirst, R.A.Haarman, E.O'Callaghan, C.Bottier, M.Burgoyne, T.Mitchison, H.M.Brown, A.

(2023) Nature 618: 625-633

  • DOI: https://doi.org/10.1038/s41586-023-06140-2
  • Primary Citation of Related Structures:  
    8GLV, 8J07

  • PubMed Abstract: 

    Motile cilia and flagella beat rhythmically on the surface of cells to power the flow of fluid and to enable spermatozoa and unicellular eukaryotes to swim. In humans, defective ciliary motility can lead to male infertility and a congenital disorder called primary ciliary dyskinesia (PCD), in which impaired clearance of mucus by the cilia causes chronic respiratory infections 1 . Ciliary movement is generated by the axoneme, a molecular machine consisting of microtubules, ATP-powered dynein motors and regulatory complexes 2 . The size and complexity of the axoneme has so far prevented the development of an atomic model, hindering efforts to understand how it functions. Here we capitalize on recent developments in artificial intelligence-enabled structure prediction and cryo-electron microscopy (cryo-EM) to determine the structure of the 96-nm modular repeats of axonemes from the flagella of the alga Chlamydomonas reinhardtii and human respiratory cilia. Our atomic models provide insights into the conservation and specialization of axonemes, the interconnectivity between dyneins and their regulators, and the mechanisms that maintain axonemal periodicity. Correlated conformational changes in mechanoregulatory complexes with their associated axonemal dynein motors provide a mechanism for the long-hypothesized mechanotransduction pathway to regulate ciliary motility. Structures of respiratory-cilia doublet microtubules from four individuals with PCD reveal how the loss of individual docking factors can selectively eradicate periodically repeating structures.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex subunit 4A [auth 0],
ZB [auth 4]
478Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000141013 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 1B [auth 1]740Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000157856 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 10C [auth 10]449Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000166578 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 11D [auth 11]822Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000132321 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 8E [auth 12],
F [auth 13],
G [auth 14],
PE [auth 8]
269Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000203666 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain-containing family member BH [auth 1A],
I [auth 1B],
J [auth 1C]
833Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163576 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 45551Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000213085 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 52620Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000166596 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 53X [auth 1R],
Y [auth 1S],
Z [auth 1T]
514Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000172361 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 95AA [auth 1V],
BA [auth 1W]
229Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204711 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 107CA [auth 1Y],
DA [auth 1Z]
194Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000157330 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex subunit 2EA [auth 2]484Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000139537 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Protein Flattop177Homo sapiensMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 141MA [auth 2I],
NA [auth 2J]
101Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163263 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 161OA [auth 2L],
PA [auth 2M],
QA [auth 2N],
RA [auth 2O]
301Homo sapiensMutation(s): 0 
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Find proteins for Q6P656 (Homo sapiens)
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GTEx:  ENSG00000156206 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella- associated protein 210SA [auth 2Q],
TA [auth 2R],
UA [auth 2S]
552Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000154479 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 276169Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000179902 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex subunit 3BB [auth 3]523Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171962 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain-containing protein 1640Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000096093 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain-containing family member C2749Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000183690 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Enkurin256Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000151023 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Meiosis-specific nuclear structural protein 1WB [auth 3W],
XB [auth 3X],
YB [auth 3Y]
495Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000138587 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FAM166B275Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000215187 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoside diphosphate kinase 7NC [auth 4O],
OC [auth 4P],
PC [auth 4Q],
QC [auth 4R]
376Homo sapiensMutation(s): 0 
EC: 2.7.4.6 (PDB Primary Data), 3.1 (UniProt), 2.7 (UniProt)
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GTEx:  ENSG00000143156 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Piercer of microtubule wall 1 proteinRC [auth 4S],
SC [auth 4T]
136Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000160345 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Piercer of microtubule wall 2 proteinTC [auth 4U],
UC [auth 4V],
VC [auth 4W]
121Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000261652 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex subunit 5WC [auth 5]501Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000146221 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
RIB43A-like with coiled-coils protein 2XC [auth 5A],
YC [auth 5B],
ZC [auth 5C]
382Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000128408 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
RIB43A-like with coiled-coils protein 1AD [auth 5D],
BD [auth 5E],
CD [auth 5F]
379Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000158423 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Sperm-associated antigen 8DD [auth 5H],
ED [auth 5I],
FD [auth 5J]
485Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137098 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein CFAP68GD [auth 5L],
HD [auth 5M]
150Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137720 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 77284Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000188523 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein CFAP90QD [auth 5X],
RD [auth 5Y]
147Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000215217 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Sperm acrosome-associated protein 9222Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000165698 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex subunit 7FE [auth 7]874Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000159625 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FAM166C201Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000173557 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 144NE [auth 7I],
OE [auth 7J]
134Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186973 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-1418Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000167858 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-2430Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000092850 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 9GF [auth 9]443Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000114473 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Radial spoke head 1 homolog309Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000160188 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha-1A chain451Homo sapiensMutation(s): 0 
EC: 3.6.5
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GTEx:  ENSG00000167552 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta-4B chain445Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000188229 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Radial spoke head protein 3 homologHFA [auth f],
HJ [auth E],
HK [auth F],
WEA [auth e]
560Homo sapiensMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Radial spoke head protein 4 homolog A716Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000111834 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
Sperm surface protein Sp17IP [auth K],
IQ [auth L],
LGA [auth k],
TGA [auth l]
151Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000064199 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
Radial spoke head protein 9 homolog276Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000172426 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Ropporin-1-like proteinCJA [auth r],
IV [auth Q],
IW [auth R],
RIA [auth q]
230Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145491 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Probable inactive peptidyl-prolyl cis-trans isomerase-like 6IX [auth S],
NJA [auth s]
311Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000185250 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Radial spoke head 14 homologHY [auth T],
VJA [auth t]
348Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000100218 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
DnaJ homolog subfamily B member 13EKA [auth v],
HAA [auth V],
HZ [auth U],
YJA [auth u]
316Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000187726 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Calmodulin-1HBA [auth W]149Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198668 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoside diphosphate kinase homolog 5GCA [auth X],
JKA [auth x],
KKA [auth y],
UCA [auth Y]
212Homo sapiensMutation(s): 0 
EC: 3.1
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GTEx:  ENSG00000112981 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 20193Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000070761 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
Parkin coregulated gene protein257Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112530 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b5 domain-containing protein 1GDA [auth Z],
LKA [auth z]
228Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182224 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
UnknownIDA [auth a0]72Homo sapiensMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
DYNLL189Homo sapiensMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
MORN repeat-containing protein 3FEA [auth c1]240Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000139714 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
IQ and ubiquitin-like domain-containing proteinGEA [auth c2]791Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000164675 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
DPY30 domain-containing protein 2HEA [auth c3],
IEA [auth c4],
JEA [auth c5],
KEA [auth c6]
177Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000133665 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 61MEA [auth d0]1,237Homo sapiensMutation(s): 0 
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Find proteins for Q8NHU2 (Homo sapiens)
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GTEx:  ENSG00000089101 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 91NEA [auth d1]767Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000183833 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 251OEA [auth d2]1,149Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000158023 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
Tetratricopeptide repeat protein 29PEA [auth d3]475Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137473 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
Zinc finger MYND domain-containing protein 12QEA [auth d4]365Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000066185 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
ACTA2377Homo sapiensMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
Axonemal dynein light intermediate polypeptide 1258Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163879 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
Centrin-2JFA [auth f2]172Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000147400 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 12LFA [auth g1]3,960Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174844 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 7MFA [auth g2],
OFA [auth g4]
4,024Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000118997 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 3NFA [auth g3]4,116Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000158486 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 6PFA [auth g5]4,158Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000115423 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 1QFA [auth g6]4,265Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000114841 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain-containing protein 39SFA [auth h1],
TFA [auth h2]
941Homo sapiensMutation(s): 0 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain-containing protein 40UFA [auth h3],
VFA [auth h4]
1,142Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000141519 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain-containing protein 96XFA [auth i1]555Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000173013 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain-containing protein 113YFA [auth i2]377Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000103021 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 299ZFA [auth i3]233Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197826 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 57AGA [auth i4],
BGA [auth i5]
1,250Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000243710 
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 43CGA [auth i6],
EGA [auth i8]
1,665Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197748 
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 44DGA [auth i7],
FGA [auth i9]
1,854Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000206530 
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 58HGA [auth j1],
IGA [auth j2]
872Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000120051 
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 73JGA [auth j3]308Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186710 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 100KGA [auth j4]611Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163885 
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Entity ID: 86
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal intermediate chain 3MGA [auth k1]891Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000162643 
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Entity ID: 87
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal intermediate chain 4NGA [auth k2]848Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000152763 
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Entity ID: 88
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal intermediate chain 7OGA [auth k3]716Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000118307 
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Entity ID: 89
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain roadblock-type 1CIA [auth o4],
HHA [auth m4],
PGA [auth k4],
WIA [auth q4]
96Homo sapiensMutation(s): 0 
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Find proteins for Q9NP97 (Homo sapiens)
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GTEx:  ENSG00000125971 
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Entity ID: 90
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain roadblock-type 2DIA [auth o5],
IHA [auth m5],
QGA [auth k5],
XIA [auth q5]
96Homo sapiensMutation(s): 0 
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Find proteins for Q8TF09 (Homo sapiens)
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GTEx:  ENSG00000168589 
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Entity ID: 91
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 10RGA [auth k8]4,589Homo sapiensMutation(s): 0 
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Find proteins for A0A669KB38 (Homo sapiens)
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GTEx:  ENSG00000197653 
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Entity ID: 92
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 2SGA [auth k9]4,427Homo sapiensMutation(s): 0 
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Find proteins for Q9P225 (Homo sapiens)
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GTEx:  ENSG00000183914 
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Entity ID: 93
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain Tctex-type protein 2BAHA [auth l7],
KJA [auth r7],
OIA [auth p7],
VHA [auth n7]
142Homo sapiensMutation(s): 0 
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Find proteins for Q8WW35 (Homo sapiens)
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GTEx:  ENSG00000213123 
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Entity ID: 94
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein light chain Tctex-type 1BHA [auth l8],
LJA [auth r8],
PIA [auth p8],
WHA [auth n8]
113Homo sapiensMutation(s): 0 
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Find proteins for P63172 (Homo sapiens)
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GTEx:  ENSG00000146425 
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Entity ID: 95
MoleculeChains Sequence LengthOrganismDetailsImage
CalaxinDHA [auth m0],
OJA [auth s0],
SIA [auth q0],
ZJA [auth u0]
211Homo sapiensMutation(s): 0 
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Find proteins for Q9HAE3 (Homo sapiens)
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GTEx:  ENSG00000034239 
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Entity ID: 96
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal intermediate chain 1EHA [auth m1],
PJA [auth s1],
TIA [auth q1],
ZHA [auth o1]
699Homo sapiensMutation(s): 0 
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Find proteins for Q9UI46 (Homo sapiens)
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GTEx:  ENSG00000122735 
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Entity ID: 97
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal intermediate chain 2AIA [auth o2],
FHA [auth m2],
QJA [auth s2],
UIA [auth q2]
605Homo sapiensMutation(s): 0 
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Find proteins for Q9GZS0 (Homo sapiens)
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GTEx:  ENSG00000171595 
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Entity ID: 98
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal light chain 1BIA [auth o3],
GHA [auth m3],
VIA [auth q3]
190Homo sapiensMutation(s): 0 
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Find proteins for Q4LDG9 (Homo sapiens)
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GTEx:  ENSG00000119661 
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Entity ID: 99
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dynein arm-docking complex subunit 1AKA [auth u6],
EIA [auth o6],
JHA [auth m6],
RJA [auth s6],
YIA [auth q6]
670Homo sapiensMutation(s): 0 
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Find proteins for Q96M63 (Homo sapiens)
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GTEx:  ENSG00000105479 
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Entity ID: 100
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dynein arm-docking complex subunit 2BKA [auth u7],
KHA [auth m7],
SJA [auth s7],
ZIA [auth q7]
1,044Homo sapiensMutation(s): 0 
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Find proteins for Q5T2S8 (Homo sapiens)
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GTEx:  ENSG00000169126 
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Entity ID: 101
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dynein arm-docking complex subunit 3AJA [auth q8],
CKA [auth u8],
FIA [auth o8],
LHA [auth m8],
TJA [auth s8]
595Homo sapiensMutation(s): 0 
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Find proteins for A5D8V7 (Homo sapiens)
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GTEx:  ENSG00000198003 
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Entity ID: 102
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dynein arm-docking complex subunit 4BJA [auth q9],
DKA [auth u9],
MHA [auth m9],
UJA [auth s9]
672Homo sapiensMutation(s): 0 
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Find proteins for Q96NG3 (Homo sapiens)
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GTEx:  ENSG00000204815 
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Entity ID: 103
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 5DJA [auth r0],
HIA [auth p0],
OHA [auth n0],
WJA [auth t0]
4,624Homo sapiensMutation(s): 0 
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Find proteins for Q8TE73 (Homo sapiens)
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GTEx:  ENSG00000039139 
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Entity ID: 104
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein axonemal heavy chain 9MJA [auth r9],
QIA [auth p9],
XHA [auth n9],
XJA [auth t9]
4,486Homo sapiensMutation(s): 0 
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Find proteins for Q9NYC9 (Homo sapiens)
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GTEx:  ENSG00000007174 
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Entity ID: 105
MoleculeChains Sequence LengthOrganismDetailsImage
Thioredoxin domain-containing protein 6FKA [auth v1],
GKA [auth v2],
HKA [auth v3]
330Homo sapiensMutation(s): 0 
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Find proteins for Q86XW9 (Homo sapiens)
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GTEx:  ENSG00000181322 
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Entity ID: 106
MoleculeChains Sequence LengthOrganismDetailsImage
Leucine-rich repeat-containing protein 34IKA [auth w]464Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171757 
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

Download Ideal Coordinates CCD File 
ADB [auth MW]
AEB [auth NO]
AGB [auth OY]
AHB [auth PQ]
AIB [auth QI]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
GDP
Query on GDP

Download Ideal Coordinates CCD File 
ABB [auth LN]
ACB [auth MF]
AKB [auth RR]
ALA [auth AJ]
AMA [auth BB]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AAB [auth KU]
AFB [auth OG]
ALB [auth SK]
ANA [auth BS]
APA [auth DE]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM141109
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM143183

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-26
    Type: Initial release
  • Version 1.1: 2023-08-02
    Changes: Database references