8IUH

RNA polymerase III pre-initiation complex open complex 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the SNAPc-bound RNA polymerase III preinitiation complex.

Hou, H.Jin, Q.Ren, Y.Chen, Z.Wang, Q.Xu, Y.

(2023) Cell Res 33: 565-568


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
snRNA-activating protein complex subunit 1A [auth 1]368Homo sapiensMutation(s): 0 
Gene Names: SNAPC1SNAP43
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PHAROS:  Q16533
GTEx:  ENSG00000023608 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
snRNA-activating protein complex subunit 3B [auth 3]411Homo sapiensMutation(s): 0 
Gene Names: SNAPC3SNAP50
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PHAROS:  Q92966
GTEx:  ENSG00000164975 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
snRNA-activating protein complex subunit 4C [auth 4]1,469Homo sapiensMutation(s): 0 
Gene Names: SNAPC4SNAP190
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PHAROS:  Q5SXM2
GTEx:  ENSG00000165684 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC1D [auth A]1,390Homo sapiensMutation(s): 0 
Gene Names: POLR3A
EC: 2.7.7.6
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PHAROS:  O14802
GTEx:  ENSG00000148606 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC2E [auth B]1,133Homo sapiensMutation(s): 0 
Gene Names: POLR3B
EC: 2.7.7.6
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GTEx:  ENSG00000013503 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC1F [auth C]346Homo sapiensMutation(s): 0 
Gene Names: POLR1CPOLR1E
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GTEx:  ENSG00000171453 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC9G [auth D]148Homo sapiensMutation(s): 0 
Gene Names: CRCP
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GTEx:  ENSG00000241258 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC1H [auth E]210Homo sapiensMutation(s): 0 
Gene Names: POLR2E
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GTEx:  ENSG00000099817 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC2I [auth F]127Homo sapiensMutation(s): 0 
Gene Names: POLR2FPOLRF
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GTEx:  ENSG00000100142 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC8J [auth G]204Homo sapiensMutation(s): 0 
Gene Names: POLR3HKIAA1665RPC8
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GTEx:  ENSG00000100413 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC3K [auth H]150Homo sapiensMutation(s): 0 
Gene Names: POLR2H
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GTEx:  ENSG00000163882 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC10L [auth I]108Homo sapiensMutation(s): 1 
Gene Names: POLR3KRPC11My010
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GTEx:  ENSG00000161980 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC5M [auth J]67Homo sapiensMutation(s): 0 
Gene Names: POLR2L
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GTEx:  ENSG00000177700 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I and III subunit RPAC2N [auth K]133Homo sapiensMutation(s): 0 
Gene Names: POLR1D
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PHAROS:  P0DPB6
GTEx:  ENSG00000186184 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC4O [auth L]58Homo sapiensMutation(s): 0 
Gene Names: POLR2K
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Find proteins for P53803 (Homo sapiens)
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GTEx:  ENSG00000147669 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC5P [auth M]708Homo sapiensMutation(s): 0 
Gene Names: POLR3EKIAA1452
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PHAROS:  Q9NVU0
GTEx:  ENSG00000058600 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC4Q [auth N]317Homo sapiensMutation(s): 0 
Gene Names: POLR3DBN51BN51T
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GTEx:  ENSG00000168495 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC3R [auth O]534Homo sapiensMutation(s): 0 
Gene Names: POLR3C
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Find proteins for Q9BUI4 (Homo sapiens)
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PHAROS:  Q9BUI4
GTEx:  ENSG00000186141 
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UniProt GroupQ9BUI4
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC6S [auth P]316Homo sapiensMutation(s): 0 
Gene Names: POLR3F
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PHAROS:  Q9H1D9
GTEx:  ENSG00000132664 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase III subunit RPC7T [auth Q]223Homo sapiensMutation(s): 0 
Gene Names: POLR3G
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GTEx:  ENSG00000113356 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
TATA-box-binding protein339Homo sapiensMutation(s): 0 
Gene Names: TBPGTF2D1TF2DTFIID
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GTEx:  ENSG00000112592 
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UniProt GroupP20226
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor IIIB 50 kDa subunit419Homo sapiensMutation(s): 0 
Gene Names: BRF2BRFUPRO1470
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GTEx:  ENSG00000104221 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor TFIIIB component B'' homolog2,624Homo sapiensMutation(s): 0 
Gene Names: BDP1KIAA1241KIAA1689TFNR
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GTEx:  ENSG00000145734 
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Entity ID: 24
MoleculeChains LengthOrganismImage
DNA (81-MER)464Homo sapiens
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Entity ID: 25
MoleculeChains LengthOrganismImage
DNA (81-MER)464Homo sapiens
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4

Download Ideal Coordinates CCD File 
HA [auth P]IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth A]
CA [auth B]
DA [auth I]
EA [auth I]
FA [auth J]
AA [auth A],
CA [auth B],
DA [auth I],
EA [auth I],
FA [auth J],
GA [auth L],
IA [auth V],
Z [auth A]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
BA [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedChina--

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-24
    Type: Initial release
  • Version 1.1: 2023-07-12
    Changes: Database references
  • Version 1.2: 2024-07-03
    Changes: Data collection