8IKP | pdb_00008ikp

Cryo-EM structure of hnRAC1-8I fibril

PDB DOI: https://doi.org/10.2210/pdb8IKP/pdb
EM Map EMD-35519: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2023-02-28 Released: 2024-03-06
Deposition Author(s): Li, D.N., Ma, Y.Y., Li, D., Dai, B., Liu, C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 8IKP

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of hnRAC1-8I fibril

Li, D.N., Ma, Y.Y., Li, D., Dai, B., Liu, C.

To be published.

Macromolecule Content

Total Structure Weight: 32.31 kDa
Atom Count: 2,048
Modeled Residue Count: 288
Deposited Residue Count: 288
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-PHE-GLY-GLY-ASN-ASP-ASN-PHI-GLY	A [auth c] AA [auth N] B [auth A] BA [auth Q] C [auth B] A [auth c], AA [auth N], B [auth A], BA [auth Q], C [auth B], CA [auth T], D [auth C], DA [auth W], E [auth D], EA [auth Z], F [auth E], FA [auth f], G [auth F], H [auth G], I [auth a], J [auth I], K [auth L], L [auth O], M [auth R], N [auth U], O [auth X], P [auth H], Q [auth b], R [auth J], S [auth M], T [auth P], U [auth S], V, W [auth Y], X [auth e], Y [auth d], Z [auth K]	9	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P09651 (Homo sapiens) Explore P09651 Go to UniProtKB: P09651
PHAROS: P09651 GTEx: ENSG00000135486
Entity Groups
UniProt Group	P09651
Sequence Annotations Expand
Reference Sequence

Small Molecules

Non-standard Monomers 1 Unique
ID	Chains	Type	Formula	2D Diagram
PHI Query on PHI	A [auth c], AA [auth N], B [auth A], BA [auth Q], C [auth B] A [auth c], AA [auth N], B [auth A], BA [auth Q], C [auth B], CA [auth T], D [auth C], DA [auth W], E [auth D], EA [auth Z], F [auth E], FA [auth f], G [auth F], H [auth G], I [auth a], J [auth I], K [auth L], L [auth O], M [auth R], N [auth U], O [auth X], P [auth H], Q [auth b], R [auth J], S [auth M], T [auth P], U [auth S], V, W [auth Y], X [auth e], Y [auth d], Z [auth K]	L-PEPTIDE LINKING	C₉ H₁₀ I N O₂

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.98 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-03-06

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-03-06
Type: Initial release