8IKA | pdb_00008ika

Cryo-EM structure of the encapsulin shell from Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb8IKA/pdb
EM Map EMD-35507: EMDB EMDataResource

Classification: VIRUS LIKE PARTICLE
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-28 Released: 2023-03-15
Deposition Author(s): Du, Z., Lai, Y., Gao, Y., Rao, Z., Gong, H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8IKA

This is version 1.1 of the entry. See complete history.

Literature

Structure of mycobacterium tuberculosis encapsulin

Du, Z., Lai, Y., Gao, Y., Rao, Z., Gong, H.

To be published.

Macromolecule Content

Total Structure Weight: 1,731.8 kDa
Atom Count: 122,040
Modeled Residue Count: 15,900
Deposited Residue Count: 15,900
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Type 1 encapsulin shell protein	A [auth A1] AA [auth AR] AB [auth Ar] B [auth A2] BA [auth AS] A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	265	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: enc, cfp29, Rv0798c
UniProt
Find proteins for I6WZG6 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore I6WZG6 Go to UniProtKB: I6WZG6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I6WZG6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.75 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-03-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81520108019
National Natural Science Foundation of China (NSFC)	China	32100976
National Natural Science Foundation of China (NSFC)	China	82222042

Revision History (Full details and data files)

Version 1.0: 2023-03-15
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.